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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:NPH3  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G64330NPH3GSP:14 PPI:25NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3); protein binding / signal transducer.
Subcellar localization
vacuole: Pubmed18686298;
Related organ
cotyledon      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Phosphopeptide enriched fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Representative Gene Model Description
AT5G64330.1:NON-PHOTOTROPIC HYPOCOTYL 3 (NPH3); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: phototropism, response to light stimulus, blue light signaling pathway; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G30440.1); Has 601 Blast hits to 434 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 595; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

AT5G64330.2:NON-PHOTOTROPIC HYPOCOTYL 3 (NPH3); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: phototropism, response to light stimulus, blue light signaling pathway; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT1G30440.1); Has 558 Blast hits to 409 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 555; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Predicted Mutant Phenotypes
hypocotyl    PO:0020100;    inflorescence branch  PO:0009081;    apical hook    PO:0000012;    
Database cross-references
TAIR Gene: AT5G64330;
IPI: IPI00891244; IPI00542309;
UniParc: UPI00017395D4; UPI0000162934;
REFSEQ_PROVISIONAL: NP_568989.1; NP_001119489.1;
KEGG: AT5G64330;

GSPannotationmethodsrelated
AT3G45780(PHOT1)PHOT1 (PHOTOTROPIN 1); FMN binding / blue light photoreceptor/ kinase/ protein binding / protein serine/threonine kinasetext mining 16777956 18585389(Co-crystallization)
AT2G30520(RPT2)RPT2 (ROOT PHOTOTROPISM 2); protein bindingtext mining 16777956(NULL)
AT1G33960(AIG1)AIG1 (AVRRPT2-INDUCED GENE 1); GTP bindingtext mining 16777956(NULL)
AT3G28930(AIG2)AIG2 (AVRRPT2-INDUCED GENE 2)text mining 16777956(NULL)
AT5G58290(RPT3)RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3); ATPasetext mining 11742986(yeast-2-hybrid assay)
AT4G29040(RPT2a)RPT2a (regulatory particle AAA-ATPase 2a); ATPasetext mining 16777956(NULL)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 24486545(FRET)
AT2G02950(PKS1)PKS1 (PHYTOCHROME KINASE SUBSTRATE 1); protein bindingtext mining 16777956(Reconstituted Complex)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 24486545(Reconstituted Complex)
AT5G58140(PHOT2)PHOT2 (PHOTOTROPIN 2); FMN binding / blue light photoreceptor/ kinase/ protein serine/threonine kinasetext mining 20071603(Affinity Capture-Western)
AT3G45780(PHOT1)PHOT1 (PHOTOTROPIN 1); FMN binding / blue light photoreceptor/ kinase/ protein binding / protein serine/threonine kinasetext mining 20071603(Affinity Capture-Western)
AT1G26830(CUL3)No related data.text mining 21990941(Affinity Capture-Western)
AT3G45780(PHOT1)PHOT1 (PHOTOTROPIN 1); FMN binding / blue light photoreceptor/ kinase/ protein binding / protein serine/threonine kinasetext mining 10542152(Reconstituted Complex)

 

Predicted
Functional Partners
annotationTotal
AT1G68050No related data.
AT2G26650No related data.
AT2G26700No related data.
AT2G34650No related data.
AT3G02850No related data.
AT4G22200No related data.
AT4G32650No related data.
AT5G46240No related data.
AT5G57360No related data.
AT5G03250phototropic-responsive NPH3 family protein
AT3G44820protein binding / signal transducer

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT5G64330No detail info. 19385720

 

TFFamilyConfidenceDetails
AGMADSLAT4G18960
AGL1MADSLAT3G58780
AGL2MADSLAT5G15800
AGL3MADSHAT2G03710
ARR10GARPLAT4G31920
ATHB1HD-ZIPHAT3G01470
GT-2TrihelixHAT1G76890
ID1C2H2(Zn)LAT1G25250
RAV1(2)AP2/EREBPHAT1G13260

Related PPIs for TFs
TF1TF2PPI
AT4G18960AT3G58780GO
AT4G18960AT5G15800GO
AT3G58780AT5G15800GO