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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:RPS28  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G64140RPS28GSP:2 PPI:73RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome.
Subcellar localization
cytosol: Pubmed16381842;
Related organ
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Related complex
Ribosome, archaea
Ribosome, eukaryotes
Representative Gene Model Description
AT5G64140.1:RIBOSOMAL PROTEIN S28 (RPS28); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S28 (RPS28B) (TAIR:AT5G03850.1); Has 802 Blast hits to 802 proteins in 280 species: Archae - 145; Bacteria - 0; Metazoa - 260; Fungi - 104; Plants - 121; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G64140;
IPI: IPI00522792;
UniParc: UPI0000000E47;
REFSEQ_PROVISIONAL: NP_201219.1;
KEGG: AT5G64140;

GSPannotationmethodsrelated
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT5G0385040S ribosomal protein S28 (RPS28B)
AT3G1009040S ribosomal protein S28 (RPS28A)
AT5G1520040S ribosomal protein S9 (RPS9B)
AT5G11900eukaryotic translation initiation factor SUI1 family protein
AT5G08180ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
AT5G06360ribosomal protein S8e family protein
AT5G04600RNA recognition motif (RRM)-containing protein
AT5G0296040S ribosomal protein S23 (RPS23B)
AT4G3467040S ribosomal protein S3A (RPS3aB)
AT4G3455540S ribosomal protein S25, putative
AT4G3386540S ribosomal protein S29 (RPS29C)
AT4G31700No related data.
AT4G30330small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative
AT4G27650No related data.
AT4G2574040S ribosomal protein S10 (RPS10A)
AT4G22380ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
AT4G21560No related data.
AT4G09800No related data.
AT4G00100No related data.
ATMG00980No related data.
ATCG01240No related data.
ATCG00900No related data.
ATCG00330No related data.
ATCG00160No related data.
AT5G66100La domain-containing protein
AT5G65010No related data.
AT5G6230040S ribosomal protein S20 (RPS20C)
AT5G5985040S ribosomal protein S15A (RPS15aF)
AT5G5842040S ribosomal protein S4 (RPS4D)
AT5G54940eukaryotic translation initiation factor SUI1, putative
AT5G4793040S ribosomal protein S27 (RPS27D)
AT5G42020No related data.
AT5G25780No related data.
AT5G23290No related data.
AT5G2029040S ribosomal protein S8 (RPS8A)
AT5G15750RNA-binding S4 domain-containing protein
AT2G22400NOL1/NOP2/sun family protein
AT2G2014026S protease regulatory complex subunit 4, putative
AT2G0999040S ribosomal protein S16 (RPS16A)
AT2G0522040S ribosomal protein S17 (RPS17B)
AT2G03270DNA-binding protein, putative
AT1G75560zinc knuckle (CCHC-type) family protein
AT1G74250DNAJ heat shock N-terminal domain-containing protein
AT1G72370No related data.
AT1G71350eukaryotic translation initiation factor SUI1 family protein
AT1G54290eukaryotic translation initiation factor SUI1, putative
AT1G4883040S ribosomal protein S7 (RPS7A)
AT1G3403040S ribosomal protein S18 (RPS18B)
AT1G22780No related data.
AT1G18080No related data.
AT1G07770No related data.
AT1G04270No related data.
AT1G03330small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative
AT3G5634040S ribosomal protein S26 (RPS26C)
AT3G5389040S ribosomal protein S21 (RPS21B)
AT3G5258040S ribosomal protein S14 (RPS14C)
AT3G46040No related data.
AT3G4503040S ribosomal protein S20 (RPS20A)
AT3G4401040S ribosomal protein S29 (RPS29B)
AT3G4398040S ribosomal protein S29 (RPS29A)
AT3G22110No related data.
AT3G20860No related data.
AT3G18130No related data.
AT3G14080small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
AT3G11710No related data.
AT3G05060SAR DNA-binding protein, putative
AT3G0492040S ribosomal protein S24 (RPS24A)
AT3G02590delta 7-sterol-C5-desaturase, putative
AT3G0208040S ribosomal protein S19 (RPS19A)
AT2G4761060S ribosomal protein L7A (RPL7aA)
AT2G3161040S ribosomal protein S3 (RPS3A)

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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Transcriptional Regulation

TFFamilyConfidenceDetails
GATA-4C2C2(Zn) GATALAT3G60530
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210