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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:COB  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G60920COBGSP:2 PPI:4COB (COBRA).
Subcellar localization
plasma membrane: Pubmed16381842;
Related organ
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
Representative Gene Model Description
AT5G60920.1:COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) (TAIR:AT3G02210.1); Has 246 Blast hits to 242 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Predicted Mutant Phenotypes
leaf epidermis    PO:0006016;    flower  PO:0009046;    vascular leaf    PO:0009025;    peduncle  PO:0009053;    leaf lamina    PO:0020039;    petal  PO:0009032;    seed    PO:0009010;    stem  PO:0009047;    
Database cross-references
TAIR Gene: AT5G60920;
IPI: IPI00520003;
UniParc: UPI00000AC3CC;
REFSEQ_PROVISIONAL: NP_568930.1;
KEGG: AT5G60920;

GSPannotationmethodsrelated
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G09790No related data.
AT3G29810No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
ATHB1HD-ZIPHAT3G01470
RAV1(2)AP2/EREBPLAT1G13260