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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ADF3  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G59880ADF3GSP:6 PPI:17ADF3 (ACTIN DEPOLYMERIZING FACTOR 3); actin binding.
Subcellar localization
chloroplast    Based on Chloroplast Proteomics data;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      urea total extract, 1-DE      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT5G59880.1:ACTIN DEPOLYMERIZING FACTOR 3 (ADF3); FUNCTIONS IN: actin binding; INVOLVED IN: response to oxidative stress, response to cadmium ion; LOCATED IN: mitochondrion, intracellular, chloroplast, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin binding (TAIR:AT5G59890.1); Has 1025 Blast hits to 1024 proteins in 201 species: Archae - 0; Bacteria - 3; Metazoa - 476; Fungi - 106; Plants - 307; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).

AT5G59880.2:ACTIN DEPOLYMERIZING FACTOR 3 (ADF3); FUNCTIONS IN: actin binding; INVOLVED IN: response to oxidative stress, response to cadmium ion; LOCATED IN: mitochondrion, intracellular, chloroplast, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF4 (ACTIN DEPOLYMERIZING FACTOR 4); actin binding (TAIR:AT5G59890.1); Has 791 Blast hits to 791 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 94; Plants - 306; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G59880;
IPI: IPI00542817; IPI00529600;
UniParc: UPI0000197127; UPI0000000BB8;
REFSEQ_PROVISIONAL: NP_851227.1; NP_568915.2;
KEGG: AT5G59880;

GSPannotationmethodsrelated
AT1G35670(ATCDPK2)ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calmodulin-dependent protein kinase/ kinasetext mining 19130088(yeast-2-hybrid assay)
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT1G35670(CDPK2)No related data.text mining 19130088(yeast-2-hybrid)
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21952135(yeast-2-hybrid)
AT3G18780(ACT2)ACT2 (ACTIN 2); structural constituent of cytoskeletontext mining 21798944(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT5G59890No related data.
AT5G52360No related data.
AT4G25590No related data.
AT3G46010No related data.
AT2G16700No related data.
AT3G46000No related data.
AT2G31200No related data.
AT4G34970No related data.
AT4G00680No related data.
AT1G01750No related data.
AT3G45990actin-depolymerizing factor, putative

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT5G59880No detail info. 19385720

 

TFFamilyConfidenceDetails
ATHB1HD-ZIPLAT3G01470
HY5bZIPLAT5G11260