Home Contact Sitemap

AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT5G59550  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G59550AT5G59550GSP:2 PPI:2zinc finger (C3HC4-type RING finger) family protein.
Representative Gene Model Description
AT5G59550.1:zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 6207 Blast hits to 6188 proteins in 212 species: Archae - 0; Bacteria - 6; Metazoa - 2070; Fungi - 537; Plants - 2564; Viruses - 41; Other Eukaryotes - 989 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G59550;
IPI: IPI00527742;
UniParc: UPI000009E07F;
REFSEQ_PROVISIONAL: NP_568910.1;
KEGG: AT5G59550;

GSPannotationmethodsrelated
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)

 


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
HY5[AT5G11260]AT5G59550 Relationship:Repressed Detected Organs:Cotyledon 17337630
HY5 [AT5G11260]AT5G59550 Relationship:Induced Detected Organs:Hypocotyl 17337630
HY5 [AT5G11260]AT5G59550 Relationship:Induced Detected Organs:Root 17337630

 

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
AGL2MADSLAT5G15800
AGL3MADSHAT2G03710
ARR10GARPLAT4G31920
ATHB1HD-ZIPLAT3G01470
GT-3bTrihelixLAT5G01380
RAV1(2)AP2/EREBPHAT1G13260
SPL14SBPLAT1G20980

Related PPIs for TFs
TF1TF2PPI
AT3G58780AT5G15800GO