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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:TCH4  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G57560TCH4GSP:4 PPI:6TCH4 (Touch 4); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase.
Subcellar localization
extracellular: Pubmed16381842;
Related organ
cotyledon      soluble fraction,1-DE      Related article
Representative Gene Model Description
AT5G57560.1:Touch 4 (TCH4); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: in 7 processes; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase (TAIR:AT4G25810.1); Has 1390 Blast hits to 1382 proteins in 211 species: Archae - 0; Bacteria - 188; Metazoa - 0; Fungi - 306; Plants - 808; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G57560;
IPI: IPI00544337;
UniParc: UPI0000052A3D;
REFSEQ_PROVISIONAL: NP_200564.1;
KEGG: AT5G57560;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT1G68185ubiquitin-relatedtext mining 20855607(yeast-2-hybrid)
AT3G57870(SCE1)SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligasetext mining 20855607(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT5G57550No related data.
AT5G57540xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGMADSLAT4G18960
AGL15MADSLAT5G13790
AGL2MADSLAT5G15800
AGL3MADSHAT2G03710
ARR1GARP/ARR-BLAT3G16857
ARR10GARPLAT4G31920
ATHB1HD-ZIPHAT3G01470
GT-3bTrihelixLAT5G01380
ID1C2H2(Zn)LAT1G25250
RAP2.2AP2/EREBPHAT3G14230
RAV1(2)AP2/EREBPHAT1G13260
TGA1bZIPHAT5G65210

Related PPIs for TFs
TF1TF2PPI
AT4G18960AT5G13790GO
AT4G18960AT5G15800GO