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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:PDC2  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G54960PDC2GSP:6 PPI:11PDC2 (pyruvate decarboxylase-2); carboxy-lyase/ catalytic/ magnesium ion binding / pyruvate decarboxylase/ thiamin pyrophosphate binding.
Related organ
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT5G54960.1:pyruvate decarboxylase-2 (PDC2); FUNCTIONS IN: pyruvate decarboxylase activity, magnesium ion binding, carboxy-lyase activity, thiamin pyrophosphate binding, catalytic activity; INVOLVED IN: response to hypoxia; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine pyrophosphate enzyme, central region (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP binding region (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: pyruvate decarboxylase, putative (TAIR:AT4G33070.1); Has 13642 Blast hits to 13633 proteins in 1439 species: Archae - 235; Bacteria - 7311; Metazoa - 135; Fungi - 522; Plants - 430; Viruses - 2; Other Eukaryotes - 5007 (source: NCBI BLink).

Related KEGG pathway    
Metabolic Pathways
   |----------Amino Acid Metabolism
   |--------------------Tryptophan metabolismLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G54960;
IPI: IPI00516480;
UniParc: UPI0000048C6D;
REFSEQ_PROVISIONAL: NP_200307.1;
KEGG: AT5G54960;

GSPannotationmethodsrelated
AT5G14240hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT5G14240hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT4G33070pyruvate decarboxylase, putativeEC
AT5G01320pyruvate decarboxylase, putativeEC
AT5G01330(PDC3)PDC3 (pyruvate decarboxylase-3); carboxy-lyase/ catalytic/ magnesium ion binding / pyruvate decarboxylase/ thiamin pyrophosphate binding / transferaseEC

 

Predicted
Functional Partners
annotationTotal
AT5G01330No related data.
AT5G01320pyruvate decarboxylase, putative
AT4G33070pyruvate decarboxylase, putative
AT1G09680pentatricopeptide (PPR) repeat-containing protein
AT1G77120No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
ABF1bZIPHAT1G49720
AGL1MADSLAT3G58780
AGL15MADSLAT5G13790
AGL2MADSLAT5G15800
AGL3MADSLAT2G03710
ARR10GARPLAT4G31920
ATHB1HD-ZIPHAT3G01470
GATA-1C2C2(Zn) GATALAT3G24050
ID1C2H2(Zn)LAT1G25250
RAV1(2)AP2/EREBPHAT1G13260
TGA1bZIPHAT5G65210

Related PPIs for TFs
TF1TF2PPI
AT3G58780AT5G13790GO
AT3G58780AT5G15800GO