Home Contact Sitemap

AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ATRBP45A  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G54900ATRBP45AGSP:5 PPI:67ATRBP45A (RNA-binding protein 45A); RNA binding.
Related organ
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT5G54900.1:RNA-binding protein 45A (ATRBP45A); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP45C; RNA binding (TAIR:AT4G27000.1); Has 26274 Blast hits to 15473 proteins in 616 species: Archae - 10; Bacteria - 1663; Metazoa - 15334; Fungi - 2743; Plants - 3912; Viruses - 0; Other Eukaryotes - 2612 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Database cross-references
TAIR Gene: AT5G54900;
IPI: IPI00522054;
UniParc: UPI00000A7291;
REFSEQ_PROVISIONAL: NP_568815.1;
KEGG: AT5G54900;

GSPannotationmethodsrelated
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G48750(CDC2)CDC2 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding / protein kinasetext mining 20706207(Affinity Capture-MS)
AT4G34160(CYCD3;1)CYCD3;1 (CYCLIN D3;1); cyclin-dependent protein kinase regulator/ protein bindingtext mining 20706207(Affinity Capture-MS)
AT3G19150(KRP6)KRP6 (KIP-RELATED PROTEIN 6); cyclin binding / cyclin-dependent protein kinase inhibitortext mining 20706207(Affinity Capture-MS)
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G69790protein kinase, putative
AT2G41880No related data.
AT4G06634zinc finger (C2H2 type) family protein
AT2G26360binding
AT1G06550enoyl-CoA hydratase/isomerase family protein
AT4G34110No related data.
AT4G30890No related data.
AT4G3080040S ribosomal protein S11 (RPS11B)
AT4G30330small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative
AT4G30220No related data.
AT4G24710ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
AT4G18040No related data.
AT3G62840hypothetical protein
AT3G58510DEAD box RNA helicase, putative (RH11)
AT3G57150No related data.
AT3G55220splicing factor, putative
AT3G55200splicing factor, putative
AT3G53570No related data.
AT3G50670No related data.
AT5G06160No related data.
AT5G16780No related data.
AT5G37720RNA and export factor-binding protein, putative
AT5G47010No related data.
AT5G50550WD-40 repeat family protein / St12p protein, putative
AT5G51300splicing factor-related
AT5G54910DEAD/DEAH box helicase, putative
AT5G55190No related data.
AT5G56900CwfJ-like family protein / zinc finger (CCCH-type) family protein
AT5G57120hypothetical protein
AT5G64270splicing factor, putative
AT5G67320No related data.
ATMG00220No related data.
ATMG01360No related data.
AT1G03530No related data.
AT1G18630No related data.
AT1G20580small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
AT1G20960No related data.
AT1G33390helicase domain-containing protein
AT1G44910protein binding
AT1G57720elongation factor 1B-gamma, putative / eEF-1B gamma, putative
AT1G61040No related data.
AT1G66510AAR2 protein family
AT1G77840eukaryotic translation initiation factor 5, putative / eIF-5, putative
AT1G80070No related data.
AT2G07727cytochrome b (MTCYB) (COB) (CYTB)
AT2G18510No related data.
AT2G32600hydroxyproline-rich glycoprotein family protein
AT2G33340nucleotide binding / ubiquitin-protein ligase
AT2G33610No related data.
AT2G33730DEAD box RNA helicase, putative
AT2G39840No related data.
AT2G43790No related data.
AT2G44710RNA recognition motif (RRM)-containing protein
AT2G47640small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative
AT3G06720No related data.
AT3G07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative
AT3G11500small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative
AT3G14010No related data.
AT3G22480No related data.
AT3G2483060S ribosomal protein L13A (RPL13aB)
AT3G27730No related data.
AT1G11650No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)