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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT5G53400  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G53400AT5G53400GSP:7 PPI:16nuclear movement family protein.
Subcellar localization
nucleus: Pubmed12444417;
Related organ
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT5G53400.1:nuclear movement family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: nuclear movement family protein (TAIR:AT4G27890.1); Has 1930 Blast hits to 1478 proteins in 221 species: Archae - 7; Bacteria - 113; Metazoa - 767; Fungi - 136; Plants - 100; Viruses - 4; Other Eukaryotes - 803 (source: NCBI BLink).

Predicted Mutant Phenotypes
petal    PO:0009032;    sepal  PO:0009031;    carpel    PO:0009030;    stamen  PO:0009029;    gynophore    PO:0006330;    
Database cross-references
TAIR Gene: AT5G53400;
IPI: IPI00519101;
UniParc: UPI000000BECA;
REFSEQ_PROVISIONAL: NP_200152.1;
KEGG: AT5G53400;

GSPannotationmethodsrelated
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G26840(SUMO1)SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tagtext mining 20855607(Affinity Capture-Western)
AT1G22920(CSN5A)CSN5A (COP9 SIGNALOSOME 5A)text mining 21798944(yeast-2-hybrid)
AT1G68185ubiquitin-relatedtext mining 20855607(yeast-2-hybrid)
AT3G57870(SCE1)SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligasetext mining 20855607(yeast-2-hybrid)
AT5G55170(SUMO3)SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3); protein binding / protein tagtext mining 20855607(Affinity Capture-Western)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G71230No related data.
AT1G77180chromatin protein family
AT2G05210No related data.
AT3G55620No related data.
AT4G24190No related data.
AT4G30510No related data.
AT5G15090No related data.
AT5G52640No related data.
AT5G56030No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT5G53400No detail info. 19385720

 

TFFamilyConfidenceDetails
ATHB1HD-ZIPLAT3G01470
RAV1(2)AP2/EREBPLAT1G13260