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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT5G48330  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G48330AT5G48330GSP:2 PPI:7regulator of chromosome condensation (RCC1) family protein.
Subcellar localization
mitochondrion: Pubmed19036033;
Representative Gene Model Description
AT5G48330.1:regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 15456 Blast hits to 4421 proteins in 299 species: Archae - 76; Bacteria - 1677; Metazoa - 5981; Fungi - 696; Plants - 1366; Viruses - 2; Other Eukaryotes - 5658 (source: NCBI BLink).

AT5G48330.2:regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 15499 Blast hits to 4421 proteins in 301 species: Archae - 76; Bacteria - 1677; Metazoa - 6053; Fungi - 697; Plants - 1371; Viruses - 2; Other Eukaryotes - 5623 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G48330;
IPI: IPI00846187; IPI00527447;
UniParc: UPI00000A2CCE; UPI000000C687;
REFSEQ_PROVISIONAL: NP_001078735.1; NP_199644.2;
KEGG: AT5G48330;

GSPannotationmethodsrelated
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT4G26650RNA recognition motif (RRM)-containing protein
AT3G26630pentatricopeptide (PPR) repeat-containing protein
AT1G33670leucine-rich repeat family protein
AT2G38490No related data.
AT3G04710ankyrin repeat family protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
ATHB1HD-ZIPLAT3G01470
SPL1SBPLAT2G47070
SPL5SBPLAT3G15270