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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:PAT1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G48150PAT1GSP:3 PPI:4PAT1 (phytochrome a signal transduction 1); signal transducer/ transcription factor.
Subcellar localization
cytosol: Pubmed10817761;
Representative Gene Model Description
AT5G48150.1:phytochrome a signal transduction 1 (PAT1); FUNCTIONS IN: transcription factor activity, signal transducer activity; INVOLVED IN: photomorphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCL21 (SCARECROW-LIKE 21); transcription factor (TAIR:AT2G04890.1); Has 1386 Blast hits to 1359 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1382; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

AT5G48150.2:phytochrome a signal transduction 1 (PAT1); FUNCTIONS IN: transcription factor activity, signal transducer activity; INVOLVED IN: photomorphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCL21 (SCARECROW-LIKE 21); transcription factor (TAIR:AT2G04890.1); Has 1386 Blast hits to 1359 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1382; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G48150;
IPI: IPI00517897;
UniParc: UPI00000AAAF2;
REFSEQ_PROVISIONAL: NP_199626.1; NP_974903.1;
KEGG: AT5G48150;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT2G04890(SCL21)SCL21 (SCARECROW-LIKE 21); transcription factortext mining 23109688(PCA)

 

Predicted
Functional Partners
annotationTotal
AT2G04890No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT5G48150No detail info. 19385720

 

TFFamilyConfidenceDetails
ARF1ABI3/VP1LAT1G59750
ATHB1HD-ZIPLAT3G01470