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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT5G39410  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G39410AT5G39410GSP:3 PPI:3binding / catalytic.
Subcellar localization
mitochondrion: Pubmed14671022; plasma membrane: Pubmed17317660; vacuole: Pubmed17151019; plastid: Pubmed12938931;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT5G39410.1:binding / catalytic; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saccharopine dehydrogenase (InterPro:IPR005097), NAD(P)-binding (InterPro:IPR016040); Has 1397 Blast hits to 1395 proteins in 304 species: Archae - 10; Bacteria - 481; Metazoa - 160; Fungi - 66; Plants - 27; Viruses - 0; Other Eukaryotes - 653 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G39410;
IPI: IPI00529205;
UniParc: UPI000009CD0E;
REFSEQ_PROVISIONAL: NP_568564.1;
KEGG: AT5G39410;

GSPannotationmethodsrelated
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G09000(GRF1)14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)text mining 21094157(Affinity Capture-MS)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)

 


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL3MADSLAT2G03710
GATA-1C2C2(Zn) GATALAT3G24050
ID1C2H2(Zn)LAT1G25250
MYB2MYBLAT2G47190
RAP2.2AP2/EREBPLAT3G14230
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPHAT5G65210