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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT5G29000  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G29000AT5G29000GSP:10 PPI:11myb family transcription factor.
Subcellar localization
nucleus: Pubmed12444417;
Representative Gene Model Description
AT5G29000.1:myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G04450.1); Has 940 Blast hits to 933 proteins in 57 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 9; Plants - 898; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

AT5G29000.2:myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G04450.1); Has 940 Blast hits to 933 proteins in 57 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 9; Plants - 898; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

AT5G29000.3:myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G04450.1); Has 940 Blast hits to 933 proteins in 57 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 9; Plants - 898; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).

AT5G29000.4:myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G04450.1); Has 886 Blast hits to 884 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

Related Mutant  
M3730 Related gene:AT5G29000;
Method:insertion site: 11022470,insertion site: 11022567
Phenotype:small plants
Related PO:whole plant  PO:0000003          
Related Datasource Link:CSHL database
*

Database cross-references
TAIR Gene: AT5G29000;
KEGG: AT5G29000;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G14920(GAI)GAI (GIBBERELLIC ACID INSENSITIVE); transcription factortext mining 25118255(yeast-2-hybrid)
AT1G25540(PFT1)PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivatortext mining 21343311(yeast-2-hybrid)
AT1G21700(SWI3C)No related data.text mining 23449474(yeast-2-hybrid)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)
AT2G33610(SWI3B)No related data.text mining 23449474(yeast-2-hybrid)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT2G46020(BRM)transcription regulatory protein SNF2, putativetext mining 23449474(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT3G04450transcription factor

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
ATHB1HD-ZIPHAT3G01470
MYB2MYBLAT2G47190
RAP2.2AP2/EREBPLAT3G14230
RAV1(2)AP2/EREBPLAT1G13260