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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:TOPP8  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G27840TOPP8GSP:9 PPI:24TOPP8; protein serine/threonine phosphatase.
Related organ
carpel      soluble fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
root      soluble fraction,1-DE      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Representative Gene Model Description
AT5G27840.1:TOPP8; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase, putative (TAIR:AT3G05580.1); Has 5602 Blast hits to 5476 proteins in 483 species: Archae - 49; Bacteria - 411; Metazoa - 2059; Fungi - 932; Plants - 614; Viruses - 9; Other Eukaryotes - 1528 (source: NCBI BLink).

AT5G27840.2:TOPP8; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase, putative (TAIR:AT3G05580.1); Has 5602 Blast hits to 5476 proteins in 483 species: Archae - 49; Bacteria - 411; Metazoa - 2059; Fungi - 932; Plants - 614; Viruses - 9; Other Eukaryotes - 1528 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G27840;
IPI: IPI00540674; IPI00535872;
UniParc: UPI0000131FB8; UPI0000162611;
REFSEQ_PROVISIONAL: NP_851085.1; NP_568501.3;
KEGG: AT5G27840;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G13640(UNE16)UNE16 (unfertilized embryo sac 16); transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT2G31305(INH3)INH3 (INHIBITOR-3)text mining 19329567(Co-localization)
AT4G13640(UNE16)UNE16 (unfertilized embryo sac 16); transcription factortext mining 21952135(yeast-2-hybrid)
AT5G19680leucine-rich repeat family proteintext mining 21798944(yeast-2-hybrid)
-(MBP)No related data.text mining 22968126(Biochemical Activity)
AT2G31305(INH3)INH3 (INHIBITOR-3)text mining 19329567(yeast-2-hybrid)
AT4G26630hypothetical proteintext mining 25387881(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT2G29400No related data.
AT3G05580serine/threonine protein phosphatase, putative
AT5G43380No related data.
AT2G41100No related data.
AT4G32990nucleotide binding
AT1G72050No related data.
AT5G59160No related data.
AT1G64040No related data.
AT3G46820No related data.
AT2G39840No related data.
AT4G11240No related data.
AT5G55260No related data.
AT3G58500No related data.
AT2G42500No related data.
AT1G59830No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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