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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT5G27330  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G27330AT5G27330GSP:2 PPI:10hypothetical protein.
Subcellar localization
endoplasmic reticulum: Pubmed16618929;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
root      SDS fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Representative Gene Model Description
AT5G27330.1:LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05130.1); Has 110457 Blast hits to 56483 proteins in 2051 species: Archae - 1653; Bacteria - 15111; Metazoa - 52441; Fungi - 7858; Plants - 4309; Viruses - 584; Other Eukaryotes - 28501 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G27330;
IPI: IPI00533882;
UniParc: UPI00001625F6;
REFSEQ_PROVISIONAL: NP_198085.1;
KEGG: AT5G27330;

GSPannotationmethodsrelated
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT5G02370kinesin motor protein-related
AT2G25490No related data.
AT3G13770pentatricopeptide (PPR) repeat-containing protein
AT1G34210No related data.
AT2G14740No related data.
AT1G21810hypothetical protein
AT3G21500No related data.
AT2G14720No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
ARR10GARPLAT4G31920
ATHB1HD-ZIPLAT3G01470
RAV1(2)AP2/EREBPLAT1G13260
WRKY18WRKY(Zn)HAT4G31800