Home Contact Sitemap

AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:EBF2  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G25350EBF2GSP:22 PPI:25EBF2 (EIN3-BINDING F BOX PROTEIN 2); protein binding.
Subcellar localization
nucleus: Pubmed14675533;
Representative Gene Model Description
AT5G25350.1:EIN3-BINDING F BOX PROTEIN 2 (EBF2); FUNCTIONS IN: protein binding; INVOLVED IN: response to ethylene stimulus, negative regulation of ethylene mediated signaling pathway, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EBF1 (EIN3-BINDING F BOX PROTEIN 1); protein binding / ubiquitin-protein ligase (TAIR:AT2G25490.1); Has 8948 Blast hits to 3063 proteins in 183 species: Archae - 0; Bacteria - 375; Metazoa - 4654; Fungi - 873; Plants - 1851; Viruses - 6; Other Eukaryotes - 1189 (source: NCBI BLink).

Predicted Mutant Phenotypes
petal    PO:0009032;    sepal  PO:0009031;    
Database cross-references
TAIR Gene: AT5G25350;
IPI: IPI00517412;
UniParc: UPI0000162590;
REFSEQ_PROVISIONAL: NP_197917.1;
KEGG: AT5G25350;

GSPannotationmethodsrelated
AT5G42190(ASK2)ASK2 (ARABIDOPSIS SKP1-LIKE 2); protein binding / ubiquitin-protein ligasetext mining 14675533(yeast-2-hybrid assay)
AT3G20770(EIN3)EIN3 (ETHYLENE-INSENSITIVE3); transcription factortext mining 14675533 14675532(yeast-2-hybrid assay|pull-down)
AT4G02570(ATCUL1)ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein bindingtext mining 14675533(pull-down)
AT1G10940(SNRK2.4)SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4); kinasetext mining 14675533 14675532(pull-down|yeast-2-hybrid assay)
AT5G20850(ATRAD51)ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA bindingtext mining 14675532(yeast-2-hybrid assay)
AT1G75950(SKP1)SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligasetext mining 14675533(yeast-2-hybrid assay)
AT2G25490(EBF1)EBF1 (EIN3-BINDING F BOX PROTEIN 1); protein binding / ubiquitin-protein ligasetext mining 15090654(yeast-2-hybrid assay)
AT2G27050(EIL1)EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1); transcription factor/ transcription regulatortext mining 14675533 14675532(yeast-2-hybrid assay)
AT2G45280(ATRAD51C)ATRAD51C; ATP binding / damaged DNA binding / protein binding / recombinase/ single-stranded DNA bindingtext mining 14675532(yeast-2-hybrid assay)
AT2G02350(SKIP3)SKIP3 (SKP1 INTERACTING PARTNER 3); carbohydrate bindingtext mining 11591653(NULL)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G02570(CUL1)No related data.text mining 14675533(Reconstituted Complex)
AT3G20770(EIN3)EIN3 (ETHYLENE-INSENSITIVE3); transcription factortext mining 15090654(yeast-2-hybrid)
AT3G60010(SK13)SK13 (SHAGGY-LIKE KINASE 13); ATP binding / protein kinase/ protein serine/threonine kinasetext mining 23166809(yeast-2-hybrid)
AT4G02570(CUL1)No related data.text mining 17158585(Phenotypic Enhancement)
AT4G34210(SK11)No related data.text mining 23166809(yeast-2-hybrid)
AT2G27050(EIL1)EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1); transcription factor/ transcription regulatortext mining 14675533(yeast-2-hybrid)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT1G75950(SKP1)SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligasetext mining 23166809(yeast-2-hybrid)
AT4G34470(SK12)No related data.text mining 23166809(yeast-2-hybrid)
AT5G42190(ASK2)ASK2 (ARABIDOPSIS SKP1-LIKE 2); protein binding / ubiquitin-protein ligasetext mining 23166809(yeast-2-hybrid)
AT2G03170(SK14)No related data.text mining 23166809(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT4G24390F-box family protein (FBX14)
AT5G15340pentatricopeptide (PPR) repeat-containing protein
AT3G11460pentatricopeptide (PPR) repeat-containing protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL15MADSLAT5G13790
AGL3MADSLAT2G03710
ARR10GARPLAT4G31920
ATHB1HD-ZIPHAT3G01470
TGA1bZIPHAT5G65210