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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ATMS1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G17920ATMS1GSP:10 PPI:50ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ copper ion binding / methionine synthase.
Subcellar localization
chloroplast    Based on Chloroplast Proteomics data;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Phosphopeptide enriched fraction: SDS total extract of A. thaliana shoots; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT5G17920.1:ATMS1; FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, copper ion binding, methionine synthase activity; INVOLVED IN: response to cadmium ion, response to salt stress, methionine biosynthetic process; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: AtMS2; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase (TAIR:AT3G03780.3); Has 2717 Blast hits to 2715 proteins in 934 species: Archae - 113; Bacteria - 1760; Metazoa - 10; Fungi - 147; Plants - 157; Viruses - 2; Other Eukaryotes - 528 (source: NCBI BLink).

AT5G17920.2:COBALAMIN-INDEPENDENT METHIONINE SYNTHASE (ATCIMS); FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: response to salt stress, methionine biosynthetic process; LOCATED IN: in 6 components; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: AtMS2; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase (TAIR:AT3G03780.3); Has 2717 Blast hits to 2715 proteins in 934 species: Archae - 113; Bacteria - 1760; Metazoa - 10; Fungi - 147; Plants - 157; Viruses - 2; Other Eukaryotes - 528 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Database cross-references
TAIR Gene: AT5G17920;
IPI: IPI00522440;
UniParc: UPI0000000BAB;
REFSEQ_PROVISIONAL: NP_001078599.1; NP_197294.1;
KEGG: AT5G17920;

GSPannotationmethodsrelated
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 18535787(Affinity Capture-MS)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)
-(RAD23A)No related data.text mining 19292762(Reconstituted Complex)
AT4G09000(GRF1)14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)text mining 21766784(Affinity Capture-MS)
AT5G46630clathrin adaptor complexes medium subunit family proteintext mining 23975897(Affinity Capture-MS)
AT4G12720(NUDT7)NUDT7; ADP-ribose diphosphatase/ NAD or NADH binding / hydrolase/ nucleoside-diphosphatase/ protein homodimerizationtext mining 22068106(Reconstituted Complex)
AT1G22300(GRF10)GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid bindingtext mining 21766784(Affinity Capture-MS)
AT1G18570(MYB51)MYB51 (MYB DOMAIN PROTEIN 51); DNA binding / transcription factortext mining 25049362(yeast-2-hybrid)
AT5G20980No related data.EC

 

Predicted
Functional Partners
annotationTotal
AT3G03780No related data.
AT5G20980No related data.
AT3G16090zinc finger (C3HC4-type RING finger) family protein
AT3G23990No related data.
AT3G58510DEAD box RNA helicase, putative (RH11)
AT3G59970No related data.
AT3G60750transketolase, putative
AT4G04880adenosine/AMP deaminase family protein
AT4G14540No related data.
AT4G15560No related data.
AT5G05920No related data.
AT5G06290No related data.
AT5G08080No related data.
AT5G08160No related data.
AT5G10450No related data.
AT5G22950No related data.
AT5G49930No related data.
AT5G52640No related data.
AT5G56940ribosomal protein S16 family protein
AT5G59910No related data.
AT5G67320No related data.
AT1G02500No related data.
AT1G04170No related data.
AT1G06470phosphate translocator-related
AT1G21130O-methyltransferase, putative
AT1G22170phosphoglycerate/bisphosphoglycerate mutase family protein
AT1G43560No related data.
AT1G50320No related data.
AT1G50480No related data.
AT1G54220dihydrolipoamide S-acetyltransferase, putative
AT1G65040protein binding / zinc ion binding
AT1G69740No related data.
AT2G16960importin beta-2 subunit family protein
AT2G20420succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative
AT2G2045060S ribosomal protein L14 (RPL14A)
AT2G36880No related data.
AT2G37560No related data.
AT2G44160No related data.
AT3G03420Ku70-binding family protein
AT3G15360No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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