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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:BPA1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G16840BPA1GSP:19 PPI:21BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductase.
Related organ
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT5G16840.1:BINDINGPARTNEROFACD11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 297 Blast hits to 297 proteins in 71 species: Archae - 0; Bacteria - 2; Metazoa - 22; Fungi - 77; Plants - 179; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

AT5G16840.2:BINDINGPARTNEROFACD11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 278 Blast hits to 278 proteins in 66 species: Archae - 0; Bacteria - 4; Metazoa - 17; Fungi - 81; Plants - 165; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

AT5G16840.3:BINDINGPARTNEROFACD11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G17720.1); Has 293 Blast hits to 293 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 75; Plants - 179; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G16840;
IPI: IPI00846971; IPI00846720; IPI00526410;
UniParc: UPI00015055E2; UPI00015055E3; UPI00000A1CA9;
REFSEQ_PROVISIONAL: NP_001078595.1; NP_001078596.1; NP_197186.1;
KEGG: AT5G16840;

GSPannotationmethodsrelated
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 18845362(co-fractionation)
AT2G34690(ACD11)ACD11 (ACCELERATED CELL DEATH 11); sphingosine transmembrane transportertext mining 18845362(yeast-2-hybrid assay|co-fractionation|in vitro reconstitution assay with recombinant protein)
AT3G13720(PRA8)PRA8text mining 18845362(yeast-2-hybrid assay)
AT1G55190(PRA7)PRA7text mining 18845362(yeast-2-hybrid assay)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G47260(GAMMA CA2)No related data.text mining 21798944(yeast-2-hybrid)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 18845362(Co-fractionation)
AT1G14340RNA recognition motif (RRM)-containing proteintext mining 21798944(yeast-2-hybrid)
AT5G16840(BPA1)BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductasetext mining 18845362(Co-fractionation)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)
AT1G55190(PRA7)PRA7text mining 18845362(yeast-2-hybrid)
AT2G34690(ACD11)ACD11 (ACCELERATED CELL DEATH 11); sphingosine transmembrane transportertext mining 18845362(Reconstituted Complex)
AT3G13720(PRA8)PRA8text mining 21798944(yeast-2-hybrid)
AT2G34690(ACD11)ACD11 (ACCELERATED CELL DEATH 11); sphingosine transmembrane transportertext mining 18845362(yeast-2-hybrid)
AT3G13720(PRA8)PRA8text mining 18845362(yeast-2-hybrid)
AT3G43230zinc finger (FYVE type) family proteintext mining 21798944(yeast-2-hybrid)
AT3G13710(PRA1.F4)PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)text mining 21798944(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT4G17720RNA recognition motif (RRM)-containing protein
AT5G32450RNA recognition motif (RRM)-containing protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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Transcriptional Regulation

TFFamilyConfidenceDetails
ATHB1HD-ZIPLAT3G01470