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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:SEP1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G15800SEP1GSP:42 PPI:42SEP1 (SEPALLATA1); DNA binding / transcription factor.
Subcellar localization
nucleus: Pubmed16381842;
Related organ
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
Representative Gene Model Description
AT5G15800.1:SEPALLATA1 (SEP1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP2 (SEPALLATA 2); DNA binding / protein binding / transcription factor (TAIR:AT3G02310.1); Has 5430 Blast hits to 5427 proteins in 700 species: Archae - 3; Bacteria - 0; Metazoa - 554; Fungi - 207; Plants - 4612; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

AT5G15800.2:SEPALLATA1 (SEP1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP2 (SEPALLATA 2); DNA binding / protein binding / transcription factor (TAIR:AT3G02310.1); Has 5430 Blast hits to 5427 proteins in 700 species: Archae - 3; Bacteria - 0; Metazoa - 554; Fungi - 207; Plants - 4612; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

Predicted Mutant Phenotypes
petal    PO:0009032;    carpel  PO:0009030;    plant ovule    PO:0020003;    stamen  PO:0009029;    shoot apical meristem    PO:0020148;    pedicel  PO:0009052;    sepal    PO:0009031;    flower  PO:0009046;    root apical meristem    PO:0020147;    
Database cross-references
TAIR Gene: AT5G15800;
IPI: IPI00891534; IPI00541035;
UniParc: UPI000016DB10; UPI0000004205;
REFSEQ_PROVISIONAL: NP_568322.1; NP_001119230.1;
KEGG: AT5G15800;

GSPannotationmethodsrelated
AT5G23260(TT16)TT16 (TRANSPARENT TESTA16); transcription factortext mining 15805477()
AT4G18960(AG)AG (AGAMOUS); DNA binding / transcription factortext mining 15805477()
AT1G71692(AGL12)AGL12 (AGAMOUS-LIKE 12); transcription factortext mining 15805477()
AT2G45650(AGL6)AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factortext mining 15805477()
AT5G51870(AGL71)AGL71 (AGAMOUS-LIKE 71); transcription factortext mining 15805477()
AT2G45660(AGL20)AGL20 (AGAMOUS-LIKE 20); transcription factortext mining 15805477()
AT4G09960(STK)STK (SEEDSTICK); protein binding / transcription factortext mining 15805477()
AT3G57230(AGL16)AGL16 (AGAMOUS-LIKE 16); transcription factortext mining 15805477()
AT4G24540(AGL24)AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factortext mining 15805477()
AT5G60910(AGL8)AGL8 (agamous-like 8); transcription factortext mining 15805477()
AT2G42830(SHP2)SHP2 (SHATTERPROOF 2); protein binding / transcription factortext mining 15805477()
AT4G37940(AGL21)AGL21; transcription factortext mining 15805477()
AT2G01730(ATCPSF73-II)ATCPSF73-II (cleavage and polyadenylation specificity factor 73 kDa subunit-II); catalytic/ protein bindingtext mining 16096970(yeast-2-hybrid assay)
AT1G69120(AP1)AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factortext mining 15805477()
AT2G22540(SVP)SVP (SHORT VEGETATIVE PHASE); transcription factor/ translation repressor, nucleic acid bindingtext mining 15805477()
AT3G58780(SHP1)SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factortext mining 15805477()
AT5G62165(AGL42)AGL42 (AGAMOUS LIKE 42); transcription factortext mining 15805477()
AT1G71692(AGL12)AGL12 (AGAMOUS-LIKE 12); transcription factortext mining 15805477(yeast-2-hybrid)
AT5G51870(AGL71)AGL71 (AGAMOUS-LIKE 71); transcription factortext mining 15805477(yeast-2-hybrid)
AT5G23260(TT16)TT16 (TRANSPARENT TESTA16); transcription factortext mining 16080001(yeast-2-hybrid)
AT4G37940(AGL21)AGL21; transcription factortext mining 15805477(yeast-2-hybrid)
AT5G62165(AGL42)AGL42 (AGAMOUS LIKE 42); transcription factortext mining 15805477(yeast-2-hybrid)
AT4G18960(AG)AG (AGAMOUS); DNA binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT5G11270(OCP3)OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3); transcription factortext mining 21798944(yeast-2-hybrid)
AT5G23260(TT16)TT16 (TRANSPARENT TESTA16); transcription factortext mining 15805477(yeast-2-hybrid)
AT1G69120(AP1)AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factortext mining 15805477(yeast-2-hybrid)
AT4G17486hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT5G20240(PI)PI (PISTILLATA); DNA binding / transcription factortext mining 12943551(yeast-2-hybrid)
AT4G09960(STK)STK (SEEDSTICK); protein binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT2G22540(SVP)SVP (SHORT VEGETATIVE PHASE); transcription factor/ translation repressor, nucleic acid bindingtext mining 15805477(yeast-2-hybrid)
AT4G02150(MOS6)MOS6 (MODIFIER OF SNC1, 6); binding / protein transportertext mining 21798944(yeast-2-hybrid)
AT2G42830(SHP2)SHP2 (SHATTERPROOF 2); protein binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT2G45660(AGL20)AGL20 (AGAMOUS-LIKE 20); transcription factortext mining 15805477(yeast-2-hybrid)
AT2G45660(AGL20)AGL20 (AGAMOUS-LIKE 20); transcription factortext mining 21798944(yeast-2-hybrid)
AT2G45650(AGL6)AGL6 (AGAMOUS-LIKE 6); DNA binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT4G24540(AGL24)AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT3G57230(AGL16)AGL16 (AGAMOUS-LIKE 16); transcription factortext mining 15805477(yeast-2-hybrid)
AT4G09960(STK)STK (SEEDSTICK); protein binding / transcription factortext mining 21798944(yeast-2-hybrid)
AT5G60910(AGL8)AGL8 (agamous-like 8); transcription factortext mining 21798944(yeast-2-hybrid)
AT4G03150hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT3G58780(SHP1)SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT4G18960(AG)AG (AGAMOUS); DNA binding / transcription factortext mining 9418042(Reconstituted Complex)

 


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT5G15800No detail info. 19385720

 

TFFamilyConfidenceDetails
AGMADSHAT4G18960
AGL1MADSLAT3G58780
AGL3MADSLAT2G03710
ATHB1HD-ZIPLAT3G01470
RAV1(2)AP2/EREBPLAT1G13260

Related PPIs for TFs
TF1TF2PPI
AT4G18960AT3G58780GO