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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:PDF1B  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G14660PDF1BGSP:4 PPI:6PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase.
Subcellar localization
mitochondrion: Pubmed11060042; plastid: Pubmed16381842;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT5G14660.1:PEPTIDE DEFORMYLASE 1B (PDF1B); FUNCTIONS IN: peptide deformylase activity, iron ion binding; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase (InterPro:IPR000181); BEST Arabidopsis thaliana protein match is: PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase (TAIR:AT1G15390.1); Has 7299 Blast hits to 7298 proteins in 1462 species: Archae - 4; Bacteria - 4215; Metazoa - 96; Fungi - 0; Plants - 63; Viruses - 2; Other Eukaryotes - 2919 (source: NCBI BLink).

AT5G14660.2:PEPTIDE DEFORMYLASE 1B (PDF1B); FUNCTIONS IN: peptide deformylase activity, iron ion binding; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase (InterPro:IPR000181); BEST Arabidopsis thaliana protein match is: PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase (TAIR:AT1G15390.1); Has 7299 Blast hits to 7298 proteins in 1462 species: Archae - 4; Bacteria - 4215; Metazoa - 96; Fungi - 0; Plants - 63; Viruses - 2; Other Eukaryotes - 2919 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT5G14660;
IPI: IPI00542984;
UniParc: UPI00000017BE;
REFSEQ_PROVISIONAL: NP_196970.1; NP_850821.1;
KEGG: AT5G14660;

GSPannotationmethodsrelated
AT2G26300(GP_ALPHA_1)GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1); GTP binding / GTPase/ channel regulator/ signal transducertext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G55240hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT3G22960(PKP-ALPHA)PKP-ALPHA; pyruvate kinasetext mining 21798944(yeast-2-hybrid)
AT2G26300(GP ALPHA 1)No related data.text mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT2G41880No related data.
AT3G06200guanylate kinase, putative

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPHAT5G65210