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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT5G14320  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G14320AT5G14320GSP:4 PPI:5130S ribosomal protein S13, chloroplast (CS13).
Subcellar localization
plastid: Pubmed16381842;
Related organ
carpel      detergent fraction,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT5G14320.1:30S ribosomal protein S13, chloroplast (CS13); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: 30S ribosomal protein S13, chloroplast, putative (TAIR:AT1G77750.1); Has 5735 Blast hits to 5735 proteins in 1744 species: Archae - 113; Bacteria - 2978; Metazoa - 171; Fungi - 134; Plants - 251; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).

AT5G14320.2:30S ribosomal protein S13, chloroplast (CS13); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: 30S ribosomal protein S13, chloroplast, putative (TAIR:AT1G77750.1); Has 4613 Blast hits to 4613 proteins in 1350 species: Archae - 0; Bacteria - 2886; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1687 (source: NCBI BLink).

Related Mutant  
    M2342 Related gene:AT5G14320;
    Method:NULL
    Phenotype:morphological abnormalities, no homozygotes
    Related PO:seedling  PO:0008037    fruit  PO:0020107          
    Related Datasource Link:Chloroplast Function Database
    *

    Database cross-references
    TAIR Gene: AT5G14320;
    KEGG: AT5G14320;

    GSPannotationmethodsrelated
    AT2G03670(CDC48B)CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
    AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 19429840(Affinity Capture-MS)
    AT2G03670(CDC48B)CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingtext mining 21952135(yeast-2-hybrid)
    AT5G46630clathrin adaptor complexes medium subunit family proteintext mining 23975897(Affinity Capture-MS)

     

    Predicted
    Functional Partners
    annotationTotal
    AT4G16760No related data.
    AT4G20360No related data.
    AT4G26780No related data.
    AT4G31700No related data.
    AT4G37930No related data.
    AT4G37990No related data.
    AT5G02080DNA/panthothenate metabolism flavoprotein family protein
    AT5G11900eukaryotic translation initiation factor SUI1 family protein
    AT5G1838040S ribosomal protein S16 (RPS16C)
    AT5G27450No related data.
    AT5G40030protein kinase, putative
    AT5G40670PQ-loop repeat family protein / transmembrane family protein
    AT5G54940eukaryotic translation initiation factor SUI1, putative
    AT5G56940ribosomal protein S16 family protein
    AT5G57120hypothetical protein
    AT5G57450No related data.
    AT5G61770No related data.
    AT5G66100La domain-containing protein
    ATCG00065No related data.
    ATCG00900No related data.
    ATCG00905No related data.
    ATCG01230No related data.
    ATCG01240No related data.
    AT1G0448060S ribosomal protein L23 (RPL23A)
    AT1G13950No related data.
    AT1G16030No related data.
    AT1G20960No related data.
    AT1G25260acidic ribosomal protein P0-related
    AT1G50940No related data.
    AT1G60440No related data.
    AT1G62850translation release factor
    AT1G71350eukaryotic translation initiation factor SUI1 family protein
    AT1G74260No related data.
    AT2G04520eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative
    AT2G045403-oxoacyl-(acyl-carrier-protein) synthase II, putative
    AT2G0999040S ribosomal protein S16 (RPS16A)
    AT2G19560No related data.
    AT2G3337060S ribosomal protein L23 (RPL23B)
    AT2G34050hypothetical protein
    AT2G35660No related data.
    AT2G47420dimethyladenosine transferase, putative
    AT3G04400No related data.
    AT3G0920060S acidic ribosomal protein P0 (RPP0B)
    AT3G2483060S ribosomal protein L13A (RPL13aB)
    AT3G4991060S ribosomal protein L26 (RPL26A)
    AT3G59280No related data.
    AT4G11420No related data.

    O: Ortholog interaction datasets
    G: Shared biological function:Go Ontology
    E: Co-expression
    F: Gene fusion method
    N: Gene neighbors method
    P: Phylogenetic profile method
    D: Enriched domain pair
    What does the displayed number mean when your mouse moved over a certain icon?(LR)


    Transcriptional Regulation

    TFFamilyConfidenceDetails
    AGL3MADSLAT2G03710
    ATHB1HD-ZIPLAT3G01470
    TAC1C2H2(Zn)LAT3G09290