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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT5G13440  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G13440AT5G13440GSP:4 PPI:39ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative.
Subcellar localization
mitochondrion: Pubmed12444417;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Related complex
Complex III (Cytochrome bc1 complex
Complex III (Cytochrome bc1 complex
Representative Gene Model Description
AT5G13440.1:ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative; FUNCTIONS IN: metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome c reductase, iron-sulphur subunit (InterPro:IPR006317), Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske [2Fe-2S] region (InterPro:IPR005806), Rieske iron-sulphur protein (InterPro:IPR014349), Ubiquinol cytochrome reductase transmembrane region (InterPro:IPR004192); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative (TAIR:AT5G13430.1); Has 3953 Blast hits to 3953 proteins in 832 species: Archae - 4; Bacteria - 1423; Metazoa - 206; Fungi - 100; Plants - 334; Viruses - 0; Other Eukaryotes - 1886 (source: NCBI BLink).

Related KEGG pathway    
Metabolic Pathways
   |----------Energy Metabolism
   |--------------------Oxidative phosphorylationLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G13440;
IPI: IPI00536150;
UniParc: UPI00000A091C;
REFSEQ_PROVISIONAL: NP_196848.1;
KEGG: AT5G13440;

GSPannotationmethodsrelated
AT2G26300(GP_ALPHA_1)GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1); GTP binding / GTPase/ channel regulator/ signal transducertext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G72750(TIM23-2)No related data.text mining 22730406(Affinity Capture-Western)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT2G26300(GP ALPHA 1)No related data.text mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT3G27240cytochrome c1, putative
AT3G17910No related data.
AT3G30775No related data.
AT3G50940AAA-type ATPase family protein
AT4G10040No related data.
AT4G27640importin beta-2 subunit family protein
AT4G32470ubiquinol-cytochrome C reductase complex 14 kDa protein, putative
AT4G32910hypothetical protein
AT4G37830cytochrome c oxidase-related
AT5G13450ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative
AT5G13490No related data.
AT5G13570No related data.
AT5G19320No related data.
AT5G19760dicarboxylate/tricarboxylate carrier (DTC)
AT5G40810cytochrome c1, putative
AT5G62600transportin-SR-related
AT5G66760No related data.
ATMG00220No related data.
AT1G13120No related data.
AT1G50920GTP-binding protein-related
AT1G51980mitochondrial processing peptidase alpha subunit, putative
AT1G55900No related data.
AT1G62850translation release factor
AT1G75200flavodoxin family protein / radical SAM domain-containing protein
AT1G80670transducin family protein / WD-40 repeat family protein
AT2G07727cytochrome b (MTCYB) (COB) (CYTB)
AT2G16960importin beta-2 subunit family protein
AT2G26140No related data.
AT2G37410No related data.
AT2G47510No related data.
AT3G02090No related data.
AT3G02280flavodoxin family protein
AT3G05040No related data.
AT3G08580No related data.
AT3G10110No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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