Home Contact Sitemap

AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:EMB3010  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G10360EMB3010GSP:8 PPI:9EMB3010 (embryo defective 3010); structural constituent of ribosome.
Subcellar localization
plasma membrane: Pubmed17317660;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Phosphopeptide enriched fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Phosphopeptide enriched fraction: SDS total extract of A. thaliana shoots; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Related complex
Ribosome, archaea
Ribosome, eukaryotes
Representative Gene Model Description
AT5G10360.1:embryo defective 3010 (EMB3010); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6, eukaryotic (InterPro:IPR014401), Ribosomal protein S6e, conserved site (InterPro:IPR018282); BEST Arabidopsis thaliana protein match is: RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome (TAIR:AT4G31700.1); Has 832 Blast hits to 830 proteins in 304 species: Archae - 152; Bacteria - 0; Metazoa - 342; Fungi - 112; Plants - 80; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Related Mutant  
M4459 Related gene:AT5G10360;
Method:T-DNA Insertion_Mutant,mutation site Exon 5
Phenotype:Embryo Defective,Preglobular
Related PO:embryo  PO:0009009          
Related Datasource Link:SeedGenes Database
*

Database cross-references
TAIR Gene: AT5G10360;
KEGG: AT5G10360;

GSPannotationmethodsrelated
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G46630clathrin adaptor complexes medium subunit family proteintext mining 23975897(Affinity Capture-MS)
AT4G26110(NAP1;1)NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA bindingtext mining 21798944(yeast-2-hybrid)
AT5G04200(MC9)No related data.text mining 23964026(Biochemical Activity)
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21952135(yeast-2-hybrid)
AT4G29040(RPT2a)RPT2a (regulatory particle AAA-ATPase 2a); ATPasetext mining 24846764(Affinity Capture-MS)
AT5G56950(NAP1;3)NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA bindingtext mining 21798944(yeast-2-hybrid)
AT3G24350(SYP32)SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptortext mining 24556609(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT4G31700No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL3MADSLAT2G03710
ATHB1HD-ZIPLAT3G01470
ATHB5HD-ZIPLAT5G65310
E2FdE2F/DPLAT5G14960
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210