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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:DME  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G04560DMEGSP:9 PPI:9DME (DEMETER); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase.
Subcellar localization
nucleus: Pubmed16381842;
Related organ
carpel      soluble fraction,1-DE      Related article
Representative Gene Model Description
AT5G04560.1:DEMETER (DME); FUNCTIONS IN: DNA N-glycosylase activity, DNA-(apurinic or apyrimidinic site) lyase activity; INVOLVED IN: embryonic development ending in seed dormancy, genetic imprinting, DNA methylation; LOCATED IN: nucleus, polar nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (TAIR:AT2G36490.1); Has 2108 Blast hits to 1993 proteins in 667 species: Archae - 137; Bacteria - 1080; Metazoa - 176; Fungi - 58; Plants - 205; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink).

AT5G04560.2:DEMETER (DME); FUNCTIONS IN: DNA N-glycosylase activity, DNA-(apurinic or apyrimidinic site) lyase activity; INVOLVED IN: embryonic development ending in seed dormancy, genetic imprinting, DNA methylation; LOCATED IN: nucleus, polar nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DML1 (DEMETER-LIKE 1); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyase/ protein binding (TAIR:AT2G36490.1); Has 2246 Blast hits to 2130 proteins in 681 species: Archae - 137; Bacteria - 1082; Metazoa - 250; Fungi - 79; Plants - 209; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).

Related Mutant  
M4446 Related gene:AT5G04560;
Method:T-DNA Insertion_Mutant,mutation site Exon 1
Phenotype:50% Defective Seeds,Preglobular
Related PO:seed  PO:0009010          
Related Datasource Link:SeedGenes Database
*

Predicted Mutant Phenotypes
plant ovule    PO:0020003;    phloem  PO:0005417;    
Database cross-references
TAIR Gene: AT5G04560;
KEGG: AT5G04560;

GSPannotationmethodsrelated
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G26840(SUMO1)SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tagtext mining 24255109(yeast-2-hybrid)
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 21952135(yeast-2-hybrid)
AT2G30620histone H1.2text mining 22519754(yeast-2-hybrid)
AT2G18050(HIS1-3)HIS1-3 (HISTONE H1-3); DNA binding / nucleosomal DNA bindingtext mining 22519754(yeast-2-hybrid)
AT2G30620histone H1.2text mining 22519754(Reconstituted Complex)
AT5G38480(GRF3)GRF3 (GENERAL REGULATORY FACTOR 3); ATP binding / protein binding / protein phosphorylated amino acid bindingtext mining 21094157(Affinity Capture-MS)
AT5G55160(SUMO2)SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2); protein binding / protein tagtext mining 24255109(yeast-2-hybrid)
AT1G06760histone H1, putativetext mining 22519754(yeast-2-hybrid)