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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT5G03290  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G03290AT5G03290GSP:5 PPI:110isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative.
Subcellar localization
plastid: Pubmed15028209; mitochondrion: Pubmed19036033;
Related organ
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT5G03290.1:isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative; FUNCTIONS IN: isocitrate dehydrogenase (NAD+) activity, ATP binding; INVOLVED IN: tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (TAIR:AT3G09810.1); Has 12731 Blast hits to 12647 proteins in 1639 species: Archae - 252; Bacteria - 5773; Metazoa - 779; Fungi - 723; Plants - 237; Viruses - 0; Other Eukaryotes - 4967 (source: NCBI BLink).

Related KEGG pathway    
Metabolic Pathways
   |----------Carbohydrate Metabolism
   |--------------------Citrate cycle (TCA cycle)Link to keggView overall Pathway
Related Mutant  
M5045 Related gene:AT5G03290;
Method:T-DNA insertion
Phenotype:When grown under such nonphysiological conditions, the three mutant lines exhibited reduced growth phenotype when compared to wild-type plants. This was most pronounced for the idhv mutant (Fig. 5).(PMID: 17468208)
Related PO:seedling  PO:0008037    whole plant  PO:0000003          
Related Datasource Link:
*

Database cross-references
TAIR Gene: AT5G03290;
KEGG: AT5G03290;

GSPannotationmethodsrelated
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G35260(IDH1)IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptortext mining 21798944(yeast-2-hybrid)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)
AT4G35650isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeEC
AT4G35260(IDH1)IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptorEC

 

Predicted
Functional Partners
annotationTotal
AT5G58290No related data.
AT5G142003-isopropylmalate dehydrogenase, chloroplast, putative
AT3G09810isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative
AT1G01960No related data.
AT1G03090No related data.
AT1G04410malate dehydrogenase, cytosolic, putative
AT1G04950No related data.
AT1G09200histone H3
AT1G09630No related data.
AT1G16280DEAD/DEAH box helicase, putative
AT1G21380VHS domain-containing protein / GAT domain-containing protein
AT1G34150tRNA pseudouridine synthase family protein
AT1G48030No related data.
AT1G53240malate dehydrogenase (NAD), mitochondrial
AT1G54220dihydrolipoamide S-acetyltransferase, putative
AT1G54340No related data.
AT1G63700No related data.
AT1G65930isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative
AT1G66530arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative
AT1G69380hypothetical protein
AT1G72560No related data.
AT1G78900No related data.
AT1G79750No related data.
AT2G01350No related data.
AT2G06210No related data.
AT2G13440glucose-inhibited division family A protein
AT2G20420succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative
AT2G21410No related data.
AT2G30970No related data.
AT2G37270No related data.
AT2G44350No related data.
AT2G46520cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative
AT2G47760No related data.
AT3G02320RNA binding / tRNA (guanine-N2-)-methyltransferase
AT3G05790No related data.
AT3G06650No related data.
AT3G08530clathrin heavy chain, putative
AT3G0920060S acidic ribosomal protein P0 (RPP0B)
AT3G1125060S acidic ribosomal protein P0 (RPP0C)
AT3G11830chaperonin, putative
AT3G12050Aha1 domain-containing protein
AT3G12670No related data.
AT3G16100No related data.
AT3G16190isochorismatase hydrolase family protein
AT3G18190chaperonin, putative
AT3G25100No related data.
AT3G27360histone H3
AT3G47520No related data.
AT3G47810No related data.
AT3G54660No related data.
AT3G58140phenylalanyl-tRNA synthetase class IIc family protein
AT3G62360carbohydrate binding
AT4G03240No related data.
AT4G05020No related data.
AT4G10710No related data.
AT4G11160translation initiation factor IF-2, mitochondrial, putative
AT4G11820No related data.
AT4G13430No related data.
AT4G14960No related data.
AT4G20360No related data.
AT4G22220No related data.
AT4G23900nucleoside diphosphate kinase 4 (NDK4)
AT4G269102-oxoacid dehydrogenase family protein
AT4G27640importin beta-2 subunit family protein
AT4G29130No related data.
AT4G3080040S ribosomal protein S11 (RPS11B)
AT4G30890No related data.
AT5G01340mitochondrial substrate carrier family protein
AT5G03340cell division cycle protein 48, putative / CDC48, putative
AT5G08300succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative
AT5G10390histone H3
AT5G10400histone H3
AT5G11670No related data.
AT5G12250No related data.
AT5G13490No related data.
AT5G14590isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative
AT5G19330armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein
AT5G19820No related data.
AT5G22330No related data.
AT5G23020No related data.
AT5G23250succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative
AT5G23670No related data.
AT5G25880No related data.
AT5G26860No related data.
AT5G27470seryl-tRNA synthetase / serine--tRNA ligase
AT5G36880acetyl-CoA synthetase, putative / acetate-CoA ligase, putative
AT5G40810cytochrome c1, putative
AT5G41560hypothetical protein
AT5G43430No related data.
AT5G47040No related data.
AT5G47770No related data.
AT5G550702-oxoacid dehydrogenase family protein
AT5G60160aspartyl aminopeptidase, putative
AT5G61770No related data.
AT5G63650No related data.
AT5G63680pyruvate kinase, putative
AT5G65360histone H3
AT5G657502-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative
AT5G67630DNA helicase, putative
AT4G35260No related data.
AT2G17130No related data.
AT4G35650isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative
AT1G32480oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor
AT1G805603-isopropylmalate dehydrogenase, chloroplast, putative
AT1G311803-isopropylmalate dehydrogenase, chloroplast, putative

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL3MADSLAT2G03710
ATHB1HD-ZIPLAT3G01470
WRKY18WRKY(Zn)LAT4G31800