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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT5G02450  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT5G02450AT5G02450GSP:5 PPI:760S ribosomal protein L36 (RPL36C).
Subcellar localization
vacuole: Pubmed17151019; plasma membrane: Pubmed15574830;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Related complex
Ribosome, eukaryotes
Representative Gene Model Description
AT5G02450.1:60S ribosomal protein L36 (RPL36C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L36 (RPL36B) (TAIR:AT3G53740.4); Has 585 Blast hits to 585 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 95; Plants - 95; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT5G02450;
IPI: IPI00518308;
UniParc: UPI0000001423;
REFSEQ_PROVISIONAL: NP_195865.1;
KEGG: AT5G02450;

GSPannotationmethodsrelated
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G29040(RPT2a)RPT2a (regulatory particle AAA-ATPase 2a); ATPasetext mining 24846764(Affinity Capture-MS)
AT5G46630clathrin adaptor complexes medium subunit family proteintext mining 23975897(Affinity Capture-MS)
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21952135(yeast-2-hybrid)
AT3G24350(SYP32)SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptortext mining 24556609(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT2G3760060S ribosomal protein L36 (RPL36A)
AT3G5374060S ribosomal protein L36 (RPL36B)

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT5G02450No detail info. 19385720

 

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
AGL3MADSLAT2G03710
ID1C2H2(Zn)LAT1G25250
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210