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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT4G40030  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G40030AT4G40030GSP:9 PPI:63histone H3.2.
Representative Gene Model Description
AT4G40030.1:histone H3.2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10278 Blast hits to 10275 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7397; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).

AT4G40030.2:histone H3.2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10278 Blast hits to 10275 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7397; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).

AT4G40030.3:histone H3.2; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10278 Blast hits to 10275 proteins in 5329 species: Archae - 0; Bacteria - 0; Metazoa - 7397; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT4G40030;
IPI: IPI00846229; IPI00539437;
REFSEQ_PROVISIONAL: NP_001078516.1; NP_001078517.1; NP_195713.1;
KEGG: AT4G40030;

GSPannotationmethodsrelated
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)
AT3G54610(HAG1)GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferasetext mining 16648464(Biochemical Activity)
AT4G29510(PRMT11)PRMT11 (ARGININE METHYLTRANSFERASE 11); protein-arginine N-methyltransferasetext mining 17711414(Biochemical Activity)
AT5G13960(SUVH4)SUVH4 (SU(VAR)3-9 HOMOLOG 4); double-stranded methylated DNA binding / histone methyltransferase(H3-K9 specific) / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN bindingtext mining 25018018(Biochemical Activity)
AT5G09790(ATXR5)ATXR5; DNA binding / protein bindingtext mining 19503079(Biochemical Activity)
AT3G44530(HIRA)HIRA (Arabidopsis homolog of histone chaperone HIRA); nucleotide binding / protein bindingtext mining 25086063(Affinity Capture-Western)
AT5G63110(HDA6)HDA6 (HISTONE DEACETYLASE 6); histone deacetylasetext mining 16648464(Biochemical Activity)
AT5G24330(ATXR6)ATXR6; DNA binding / protein bindingtext mining 19503079(Biochemical Activity)

 

Predicted
Functional Partners
annotationTotal
AT1G75600histone H3.2, putative
AT1G13370histone H3, putative
AT4G40040histone H3.2
AT5G10400histone H3
AT1G09200histone H3
AT5G65360histone H3
AT5G10390histone H3
AT5G12250No related data.
AT5G10450No related data.
AT5G02560No related data.
AT4G31120No related data.
AT4G27230No related data.
AT4G26840No related data.
AT4G16420No related data.
AT4G10710No related data.
AT4G02060No related data.
AT3G54560No related data.
AT3G48430No related data.
AT5G17690No related data.
AT5G23860No related data.
AT5G27740No related data.
AT5G40820No related data.
AT5G46280DNA replication licensing factor, putative
AT5G50320No related data.
AT5G56740No related data.
AT5G58230No related data.
AT5G59910No related data.
AT5G63960No related data.
AT5G64610No related data.
AT5G67100No related data.
AT1G04870No related data.
AT1G16970No related data.
AT1G18450No related data.
AT1G18800No related data.
AT1G32750No related data.
AT1G44900ATP binding / DNA binding / DNA-dependent ATPase
AT1G48050No related data.
AT1G54690No related data.
AT1G55250No related data.
AT1G65470No related data.
AT2G16440DNA replication licensing factor, putative
AT2G16960importin beta-2 subunit family protein
AT2G19480No related data.
AT2G29570No related data.
AT2G44950No related data.
AT3G06930No related data.
AT3G12270No related data.
AT3G20020No related data.
AT3G28730No related data.
AT5G10980histone H3
AT1G19890No related data.
AT5G65350histone H3
AT5G12910histone H3, putative
AT3G27360histone H3

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
RAV1(2)AP2/EREBPLAT1G13260