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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:LBD39  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G37540LBD39GSP:3 PPI:4LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39).
Representative Gene Model Description
AT4G37540.1:LOB DOMAIN-CONTAINING PROTEIN 39 (LBD39); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) (TAIR:AT3G49940.1); Has 313 Blast hits to 313 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT4G37540;
IPI: IPI00528264;
UniParc: UPI00000A8BB1;
REFSEQ_PROVISIONAL: NP_195470.1;
KEGG: AT4G37540;

GSPannotationmethodsrelated
AT3G18130(RACK1C_AT)RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G18130(RACK1C_AT)RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide bindingtext mining 21952135(yeast-2-hybrid)
AT2G46020(BRM)transcription regulatory protein SNF2, putativetext mining 23449474(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT5G67420No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL1MADSHAT3G58780
AGL2MADSLAT5G15800
AGL3MADSHAT2G03710
ARR10GARPLAT4G31920
ATHB1HD-ZIPLAT3G01470
ATHB5HD-ZIPHAT5G65310
RAV1(2)AP2/EREBPHAT1G13260
TGA1bZIPHAT5G65210

Related PPIs for TFs
TF1TF2PPI
AT3G58780AT5G15800GO