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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:FSD1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G25100FSD1GSP:12 PPI:14FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase.
Subcellar localization
plasma membrane: Pubmed15060130; plastid: Pubmed16381842; nucleus: Pubmed15496452; mitochondrion: Pubmed12492832;
Related organ
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT4G25100.1:FE SUPEROXIDE DISMUTASE 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1); Has 7965 Blast hits to 7964 proteins in 2198 species: Archae - 145; Bacteria - 5093; Metazoa - 350; Fungi - 593; Plants - 256; Viruses - 1; Other Eukaryotes - 1527 (source: NCBI BLink).

AT4G25100.2:FE SUPEROXIDE DISMUTASE 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: thylakoid, mitochondrion, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1); Has 7965 Blast hits to 7964 proteins in 2198 species: Archae - 145; Bacteria - 5093; Metazoa - 350; Fungi - 593; Plants - 256; Viruses - 1; Other Eukaryotes - 1527 (source: NCBI BLink).

AT4G25100.3:FE SUPEROXIDE DISMUTASE 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: thylakoid, mitochondrion, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1); Has 7965 Blast hits to 7964 proteins in 2198 species: Archae - 145; Bacteria - 5093; Metazoa - 350; Fungi - 593; Plants - 256; Viruses - 1; Other Eukaryotes - 1527 (source: NCBI BLink).

AT4G25100.4:FE SUPEROXIDE DISMUTASE 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: mitochondrion, chloroplast, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese and iron superoxide dismutase (InterPro:IPR001189); BEST Arabidopsis thaliana protein match is: FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT5G51100.1); Has 7904 Blast hits to 7903 proteins in 2195 species: Archae - 145; Bacteria - 5086; Metazoa - 348; Fungi - 588; Plants - 255; Viruses - 1; Other Eukaryotes - 1481 (source: NCBI BLink).

Predicted Mutant Phenotypes
shoot system    PO:0009006;    leaf mesophyll  PO:0005645;    
Database cross-references
TAIR Gene: AT4G25100;
IPI: IPI00656789; IPI00534358;
UniParc: UPI00005DC0A2; UPI00000ABDB9;
REFSEQ_PROVISIONAL: NP_194240.1; NP_849440.1; NP_849441.1; NP_001031710.1;
KEGG: AT4G25100;

GSPannotationmethodsrelated
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G14716(ATARD1)ATARD1 (ACIREDUCTONE DIOXYGENASE 1); acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G26300(GP_ALPHA_1)GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1); GTP binding / GTPase/ channel regulator/ signal transducertext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G26300(GP ALPHA 1)No related data.text mining 21952135(yeast-2-hybrid)
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 21952135(yeast-2-hybrid)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 19429840(Affinity Capture-MS)
AT5G23310(FSD3)FSD3 (FE SUPEROXIDE DISMUTASE 3); superoxide dismutasetext mining 21798944(yeast-2-hybrid)
AT4G14716(ARD1)No related data.text mining 21952135(yeast-2-hybrid)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT3G56350superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative
AT3G10920No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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Transcriptional Regulation

TFFamilyConfidenceDetails
AGL15MADSLAT5G13790
ARR10GARPLAT4G31920
ATHB1HD-ZIPHAT3G01470
RAV1(2)AP2/EREBPHAT1G13260