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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:PYR4  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G22930PYR4GSP:3 PPI:18PYR4 (PYRIMIDIN 4); dihydroorotase/ hydrolase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides.
Subcellar localization
mitochondrion: Pubmed16381842; plastid: Pubmed18431481;
Related organ
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT4G22930.1:PYRIMIDIN 4 (PYR4); FUNCTIONS IN: hydrolase activity, dihydroorotase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides; INVOLVED IN: 'de novo' pyrimidine base biosynthetic process, pyrimidine base biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroorotase, conserved site (InterPro:IPR002195), Dihydroorotase homodimeric type (InterPro:IPR004721), Amidohydrolase 1 (InterPro:IPR006680); Has 2424 Blast hits to 2424 proteins in 706 species: Archae - 22; Bacteria - 1377; Metazoa - 1; Fungi - 94; Plants - 28; Viruses - 0; Other Eukaryotes - 902 (source: NCBI BLink).

Related KEGG pathway    
Metabolic Pathways
   |----------Nucleotide Metabolism
   |--------------------Pyrimidine metabolismLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT4G22930;
IPI: IPI00535140;
UniParc: UPI0000132C59;
REFSEQ_PROVISIONAL: NP_194024.1;
KEGG: AT4G22930;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT4G04955(ATALN)ATALN (Arabidopsis allantoinase); allantoinase/ hydrolaseEC

 

Predicted
Functional Partners
annotationTotal
AT1G04950No related data.
AT1G11680No related data.
AT1G32470glycine cleavage system H protein, mitochondrial, putative
AT1G59900No related data.
AT2G045403-oxoacyl-(acyl-carrier-protein) synthase II, putative
AT2G30970No related data.
AT3G16090zinc finger (C3HC4-type RING finger) family protein
AT3G23890No related data.
AT3G54900No related data.
AT4G08790nitrilase, putative
AT4G16700No related data.
AT4G26840No related data.
AT4G39800No related data.
AT5G04130DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative
AT5G16500protein kinase family protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
ARR10GARPLAT4G31920
GATA-2C2C2(Zn) GATALAT2G45050
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210