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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT4G20380  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G20380AT4G20380GSP:15 PPI:16zinc finger protein (LSD1).
Subcellar localization
nucleus: Pubmed16957775; cytosol: Pubmed16957775;
Related organ
cell suspension culture      full cell extract,1-DE      Related article
Representative Gene Model Description
AT4G20380.1:LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 233 Blast hits to 191 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

AT4G20380.2:LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 234 Blast hits to 192 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

AT4G20380.3:LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 233 Blast hits to 191 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

AT4G20380.4:LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 233 Blast hits to 191 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

AT4G20380.5:LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 233 Blast hits to 191 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

AT4G20380.6:LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 233 Blast hits to 191 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

AT4G20380.7:LESION SIMULATING DISEASE (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3); Has 234 Blast hits to 192 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

AT4G20380.8:zinc finger protein (LSD1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: LOL1 (LSD ONE LIKE 1); DNA binding (TAIR:AT1G32540.3).

Predicted Mutant Phenotypes
vascular leaf    PO:0009025;    microgametophyte  PO:0025280;    
Database cross-references
TAIR Gene: AT4G20380;
IPI: IPI00938780; IPI00548444; IPI00532559;
UniParc: UPI0001A7B238; UPI000009E199; UPI00000A619A;
REFSEQ_PROVISIONAL: NP_001031680.2; NP_001078413.1; NP_001154257.1; NP_849548.1; NP_849549.1; NP_567599.3; NP_001031678.1; NP_001031679.1;
KEGG: AT4G20380;

GSPannotationmethodsrelated
AT4G02640(BZO2H1)BZO2H1; DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factortext mining 16957775(bioassay)
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G20630(CAT1)CAT1 (CATALASE 1); catalasetext mining 23958864(Affinity Capture-MS)
AT5G13190hypothetical proteintext mining 21526181(yeast-2-hybrid)
AT1G20630(CAT1)CAT1 (CATALASE 1); catalasetext mining 23958864(yeast-2-hybrid)
AT4G02640(BZO2H1)BZO2H1; DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factortext mining 16957775(yeast-2-hybrid)
AT4G35090(CAT2)CAT2 (CATALASE 2); catalasetext mining 23958864(Affinity Capture-Western)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)
AT1G20620(CAT3)CAT3 (CATIONIC AMINO ACID TRANSPORTER 3); basic amino acid transmembrane transporter/ cationic amino acid transmembrane transportertext mining 23958864(yeast-2-hybrid)
AT4G02640(BZO2H1)BZO2H1; DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factortext mining 16957775(PCA)
AT4G20380zinc finger protein (LSD1)text mining 15469500(PCA)
AT1G20620(CAT3)CAT3 (CATIONIC AMINO ACID TRANSPORTER 3); basic amino acid transmembrane transporter/ cationic amino acid transmembrane transportertext mining 23958864(Affinity Capture-Western)
AT5G13190hypothetical proteintext mining 21526181(Reconstituted Complex)
AT4G35090(CAT2)CAT2 (CATALASE 2); catalasetext mining 23958864(yeast-2-hybrid)
AT1G78300(GRF2)GRF2 (GENERAL REGULATORY FACTOR 2); protein binding / protein phosphorylated amino acid bindingtext mining 23512855(Affinity Capture-Western)

 

Predicted
Functional Partners
annotationTotal
AT1G31260No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGMADSLAT4G18960
ATHB1HD-ZIPLAT3G01470
RAV1(2)AP2/EREBPLAT1G13260