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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT4G18100  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G18100AT4G18100GSP:5 PPI:9560S ribosomal protein L32 (RPL32A).
Subcellar localization
nucleus: Pubmed15496452; plasma membrane: Pubmed15574830;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Related complex
Ribosome, archaea
Ribosome, eukaryotes
Representative Gene Model Description
AT4G18100.1:60S ribosomal protein L32 (RPL32A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: callus, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32e (InterPro:IPR001515), Ribosomal protein L32e, conserved site (InterPro:IPR018263); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L32 (RPL32B) (TAIR:AT5G46430.2); Has 1112 Blast hits to 1112 proteins in 342 species: Archae - 217; Bacteria - 0; Metazoa - 540; Fungi - 96; Plants - 104; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT4G18100;
IPI: IPI00534156;
UniParc: UPI0000132FB3;
REFSEQ_PROVISIONAL: NP_193544.1;
KEGG: AT4G18100;

GSPannotationmethodsrelated
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT4G29040(RPT2a)RPT2a (regulatory particle AAA-ATPase 2a); ATPasetext mining 24846764(Affinity Capture-MS)
AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21952135(yeast-2-hybrid)
AT5G46630clathrin adaptor complexes medium subunit family proteintext mining 23975897(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT5G4643060S ribosomal protein L32 (RPL32B)
AT4G2709060S ribosomal protein L14 (RPL14B)
AT4G2623060S ribosomal protein L31 (RPL31B)
AT4G22380ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
AT4G1739060S ribosomal protein L15 (RPL15B)
AT4G1672060S ribosomal protein L15 (RPL15A)
AT4G1432060S ribosomal protein L36a/L44 (RPL36aB)
AT4G1317060S ribosomal protein L13A (RPL13aC)
AT4G0223060S ribosomal protein L19 (RPL19C)
AT4G00100No related data.
AT3G6024560S ribosomal protein L37a (RPL37aC)
AT3G5954060S ribosomal protein L38 (RPL38B)
AT3G55280No related data.
AT3G53230cell division cycle protein 48, putative / CDC48, putative
AT3G4991060S ribosomal protein L26 (RPL26A)
AT3G4459060S acidic ribosomal protein P2 (RPP2D)
AT3G23620brix domain-containing protein
AT3G2339060S ribosomal protein L36a/L44 (RPL36aA)
AT3G20250No related data.
AT3G18130No related data.
AT3G17465No related data.
AT3G1358060S ribosomal protein L7 (RPL7D)
AT3G1125060S acidic ribosomal protein P0 (RPP0C)
ATMG00980No related data.
ATCG01310No related data.
ATCG01240No related data.
ATCG01230No related data.
ATCG00905No related data.
ATCG00900No related data.
ATCG00830No related data.
ATCG00790No related data.
ATCG00065No related data.
AT5G64670ribosomal protein L15 family protein
AT5G61770No related data.
AT5G4770060S acidic ribosomal protein P1 (RPP1C)
AT5G39740No related data.
AT5G2390060S ribosomal protein L13 (RPL13D)
AT5G23535KOW domain-containing protein
AT5G1838040S ribosomal protein S16 (RPS16C)
AT5G08180ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
AT5G0296040S ribosomal protein S23 (RPS23B)
AT5G0261060S ribosomal protein L35 (RPL35D)
AT4G35490No related data.
AT4G3467040S ribosomal protein S3A (RPS3aB)
AT4G31700No related data.
AT2G18020No related data.
AT2G0999040S ribosomal protein S16 (RPS16A)
AT2G0522040S ribosomal protein S17 (RPS17B)
AT1G7427060S ribosomal protein L35a (RPL35aC)
AT1G7405060S ribosomal protein L6 (RPL6C)
AT1G70600structural constituent of ribosome
AT1G6743060S ribosomal protein L17 (RPL17B)
AT1G6658060S ribosomal protein L10 (RPL10C)
AT1G61580No related data.
AT1G5786060S ribosomal protein L21
AT1G5766060S ribosomal protein L21 (RPL21E)
AT1G5230060S ribosomal protein L37 (RPL37B)
AT1G4883040S ribosomal protein S7 (RPS7A)
AT1G3624060S ribosomal protein L30 (RPL30A)
AT1G33140No related data.
AT1G3312060S ribosomal protein L9 (RPL90B)
AT1G2688060S ribosomal protein L34 (RPL34A)
AT1G25260acidic ribosomal protein P0-related
AT1G23290No related data.
AT1G0448060S ribosomal protein L23 (RPL23A)
AT1G04270No related data.
AT1G03210phenazine biosynthesis PhzC/PhzF family protein
AT3G0963060S ribosomal protein L4/L1 (RPL4A)
AT3G0920060S acidic ribosomal protein P0 (RPP0B)
AT3G05590No related data.
AT3G0556060S ribosomal protein L22-2 (RPL22B)
AT3G0492040S ribosomal protein S24 (RPS24A)
AT3G04400No related data.
AT3G0219060S ribosomal protein L39 (RPL39B)
AT3G01790ribosomal protein L13 family protein
AT2G4761060S ribosomal protein L7A (RPL7aA)
AT2G4486060S ribosomal protein L24, putative
AT2G4346060S ribosomal protein L38 (RPL38A)
AT2G42740No related data.
AT2G3939060S ribosomal protein L35 (RPL35B)
AT2G3760060S ribosomal protein L36 (RPL36A)
AT2G37270No related data.
AT2G36620No related data.
AT2G3448060S ribosomal protein L18A (RPL18aB)
AT2G3337060S ribosomal protein L23 (RPL23B)
AT2G3222060S ribosomal protein L27 (RPL27A)
AT2G3206040S ribosomal protein S12 (RPS12C)
AT2G27530No related data.
AT2G27200GTP-binding family protein
AT2G20060ribosomal protein L4 family protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
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Transcriptional Regulation

TFFamilyConfidenceDetails
AGL3MADSLAT2G03710
ATHB5HD-ZIPLAT5G65310
GATA-4C2C2(Zn) GATALAT3G60530
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210