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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:SYP23  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G17730SYP23GSP:114 PPI:115SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor.
Subcellar localization
vacuole: Pubmed17151019;
Representative Gene Model Description
AT4G17730.1:SYNTAXIN OF PLANTS 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: VAM3; SNAP receptor (TAIR:AT5G46860.1); Has 1274 Blast hits to 1274 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 694; Fungi - 185; Plants - 254; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).

AT4G17730.2:SYNTAXIN OF PLANTS 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: VAM3; SNAP receptor (TAIR:AT5G46860.1); Has 1307 Blast hits to 1307 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 713; Fungi - 192; Plants - 254; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).

Related KEGG pathway    
Regulatory Pathways
   |----------Folding, Sorting and Degradation
   |--------------------SNARE interactions in vesicular transportLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT4G17730;
IPI: IPI00846179; IPI00527367;
UniParc: UPI000150557B; UPI00001362DF;
REFSEQ_PROVISIONAL: NP_001078403.1; NP_567537.1;
KEGG: AT4G17730;

GSPannotationmethodsrelated
AT1G79590(SYP52)SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptortext mining 11739776(NULL)
AT1G16240(SYP51)SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptortext mining 11739776(NULL)
AT1G04270(RPS15)RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosometext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G0448060S ribosomal protein L23 (RPL23A)text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G15670kelch repeat-containing F-box family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G30230elongation factor 1-beta / EF-1-betatext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G30530(UGT78D1)UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groupstext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G34000(OHP2)OHP2 (ONE-HELIX PROTEIN 2)text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G35670(ATCDPK2)ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calmodulin-dependent protein kinase/ kinasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G44920hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G55150DEAD box RNA helicase, putative (RH20)text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G56280(ATDI19)ATDI19text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G69460emp24/gp25L/p24 family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G71260(ATWHY2)ATWHY2 (A. THALIANA WHIRLY 2); DNA bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G795002-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G06850(EXGT-A1)EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G21620(RD2)RD2text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G23090hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G32240hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G3719060S ribosomal protein L12 (RPL12A)text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G38530(LTP2)LTP2 (LIPID TRANSFER PROTEIN 2); lipid bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G05500rubber elongation factor (REF) family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G20290(ATEHD1)ATEHD1 (EPS15 HOMOLOGY DOMAIN 1); GTP binding / GTPase/ calcium ion bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G28930(AIG2)AIG2 (AVRRPT2-INDUCED GENE 2)text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G53990universal stress protein (USP) family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G07940hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G12510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G26300(GP_ALPHA_1)GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1); GTP binding / GTPase/ channel regulator/ signal transducertext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G52760esterase/lipase/thioesterase family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G13640(UNE16)UNE16 (unfertilized embryo sac 16); transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G24770(RBP31)RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G26410hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G01540(LECRKA4.1)LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1); kinasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G01800saposin B domain-containing proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G10860CBS domain-containing proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G13190hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G13630(GUN5)GUN5 (GENOMES UNCOUPLED 5); magnesium chelatasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G18050auxin-responsive protein, putativetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G20230(ATBCB)ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN); copper ion binding / electron carriertext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G29000myb family transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G39410binding / catalytictext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G59105hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G62360invertase/pectin methylesterase inhibitor family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G64140(RPS28)RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosometext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G65495hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
ATCG00220(PSBM)photosystem II protein Mtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G35720(ANNAT1)ANNAT1 (ANNEXIN ARABIDOPSIS 1); ATP binding / calcium ion binding / calcium-dependent phospholipid binding / copper ion binding / peroxidase/ protein homodimerizationtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G14710(ATARD2)acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G20100hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G24650(ABI3)ABI3 (ABA INSENSITIVE 3); DNA binding / basal transcription repressor/ transcription activator/ transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G15730(PLDALPHA1)PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1); phospholipase Dtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G14240hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G03540(ATEXO70A1)ATEXO70A1 (exocyst subunit EXO70 family protein A1); protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G05500(NTMC2T2.1)NTMC2T2.1text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G05760(SYP31)SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G35720(ANNAT1)ANNAT1 (ANNEXIN ARABIDOPSIS 1); ATP binding / calcium ion binding / calcium-dependent phospholipid binding / copper ion binding / peroxidase/ protein homodimerizationtext mining 21952135(yeast-2-hybrid)
AT3G05500rubber elongation factor (REF) family proteintext mining 21952135(yeast-2-hybrid)
AT1G30530(UGT78D1)UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groupstext mining 21952135(yeast-2-hybrid)
AT3G28930(AIG2)AIG2 (AVRRPT2-INDUCED GENE 2)text mining 21952135(yeast-2-hybrid)
AT5G01800saposin B domain-containing proteintext mining 21952135(yeast-2-hybrid)
AT1G20100hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT4G24770(RBP31)RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) bindingtext mining 21952135(yeast-2-hybrid)
AT4G13640(UNE16)UNE16 (unfertilized embryo sac 16); transcription factortext mining 21952135(yeast-2-hybrid)
AT2G3719060S ribosomal protein L12 (RPL12A)text mining 21952135(yeast-2-hybrid)
AT2G21620(RD2)RD2text mining 21952135(yeast-2-hybrid)
AT3G20290(EHD1)No related data.text mining 21952135(yeast-2-hybrid)
AT1G44920hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)
AT5G01540(LECRKA4.1)LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1); kinasetext mining 21952135(yeast-2-hybrid)
AT2G32240hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT1G69460emp24/gp25L/p24 family proteintext mining 21952135(yeast-2-hybrid)
AT5G05760(SYP31)SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptortext mining 21952135(yeast-2-hybrid)
AT1G0448060S ribosomal protein L23 (RPL23A)text mining 21952135(yeast-2-hybrid)
AT3G53990universal stress protein (USP) family proteintext mining 21952135(yeast-2-hybrid)
AT5G60640(PDIL1-4)No related data.text mining 21909944(yeast-2-hybrid)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT1G35670(CDPK2)No related data.text mining 21952135(yeast-2-hybrid)
AT1G34000(OHP2)OHP2 (ONE-HELIX PROTEIN 2)text mining 21952135(yeast-2-hybrid)
AT5G64140(RPS28)RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosometext mining 21952135(yeast-2-hybrid)
AT5G03540(EXO70A1)No related data.text mining 21952135(yeast-2-hybrid)
AT5G59105hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT4G07940hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT1G15670kelch repeat-containing F-box family proteintext mining 21952135(yeast-2-hybrid)
AT1G04270(RPS15)RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosometext mining 21952135(yeast-2-hybrid)
AT5G65495hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT5G10860CBS domain-containing proteintext mining 21952135(yeast-2-hybrid)
AT1G71260(ATWHY2)ATWHY2 (A. THALIANA WHIRLY 2); DNA bindingtext mining 21952135(yeast-2-hybrid)
AT5G62360invertase/pectin methylesterase inhibitor family proteintext mining 21952135(yeast-2-hybrid)
AT5G13630(GUN5)GUN5 (GENOMES UNCOUPLED 5); magnesium chelatasetext mining 21952135(yeast-2-hybrid)
AT5G13190hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT3G15730(PLDALPHA1)PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1); phospholipase Dtext mining 21952135(yeast-2-hybrid)
AT1G05500(NTMC2T2.1)NTMC2T2.1text mining 21952135(yeast-2-hybrid)
AT4G14710(ATARD2)acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingtext mining 21952135(yeast-2-hybrid)
AT5G29000myb family transcription factortext mining 21952135(yeast-2-hybrid)
AT1G52760(LysoPL2)No related data.text mining 21952135(yeast-2-hybrid)
AT1G30230elongation factor 1-beta / EF-1-betatext mining 21952135(yeast-2-hybrid)
AT3G24650(ABI3)ABI3 (ABA INSENSITIVE 3); DNA binding / basal transcription repressor/ transcription activator/ transcription factortext mining 21952135(yeast-2-hybrid)
AT5G39410binding / catalytictext mining 21952135(yeast-2-hybrid)
AT4G12510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteintext mining 21952135(yeast-2-hybrid)
AT1G79500(AtkdsA1)No related data.text mining 21952135(yeast-2-hybrid)
AT5G39510(SGR4)SGR4 (SHOOT GRAVITROPSIM 4); receptortext mining 21143674(Co-fractionation)
AT5G20230(BCB)No related data.text mining 21952135(yeast-2-hybrid)
AT1G55150DEAD box RNA helicase, putative (RH20)text mining 21952135(yeast-2-hybrid)
AT2G23090hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT2G06850(XTH4)No related data.text mining 21952135(yeast-2-hybrid)
AT1G56280(DI19)No related data.text mining 21952135(yeast-2-hybrid)
AT5G14240hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT2G26300(GP ALPHA 1)No related data.text mining 21952135(yeast-2-hybrid)
AT4G13640(UNE16)UNE16 (unfertilized embryo sac 16); transcription factortext mining 21952135(yeast-2-hybrid)
AT5G18050auxin-responsive protein, putativetext mining 21952135(yeast-2-hybrid)
AT4G26410hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT2G38530(LTP2)LTP2 (LIPID TRANSFER PROTEIN 2); lipid bindingtext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT5G16830No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
ARR2GARP/ARR-BLAT4G16110
CDC5MYBLAT1G09770
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPHAT5G65210