Home Contact Sitemap

AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:SCL13  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G17230SCL13GSP:3 PPI:3SCL13 (Scarecrow-like 13); transcription factor.
Subcellar localization
nucleus: Pubmed12444417;
Related organ
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
Representative Gene Model Description
AT4G17230.1:Scarecrow-like 13 (SCL13); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCL5; transcription factor (TAIR:AT1G50600.1); Has 1331 Blast hits to 1306 proteins in 187 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1327; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT4G17230;
IPI: IPI00529179;
UniParc: UPI0001A7B0F5;
REFSEQ_PROVISIONAL: NP_193456.4;
KEGG: AT4G17230;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G18790(PHYB)PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducertext mining 16680434(Synthetic Growth Defect)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)

 


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT4G17230No detail info. 19385720

 

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
AGL3MADSLAT2G03710
ARR10GARPLAT4G31920
ATHB1HD-ZIPHAT3G01470
RAV1(2)AP2/EREBPHAT1G13260
SPL14SBPLAT1G20980
TGA1bZIPHAT5G65210