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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ATG8F  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G16520ATG8FGSP:13 PPI:74ATG8F (autophagy 8f); microtubule binding.
Subcellar localization
cytosol: Pubmed16157655; vacuole: Pubmed15494556; cytoskeleton: Pubmed12444417;
Representative Gene Model Description
AT4G16520.1:autophagy 8f (ATG8F); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: AtATG8e; microtubule binding (TAIR:AT2G45170.2); Has 1164 Blast hits to 1162 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 582; Fungi - 125; Plants - 171; Viruses - 3; Other Eukaryotes - 283 (source: NCBI BLink).

AT4G16520.2:autophagy 8f (ATG8F); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: AtATG8e; microtubule binding (TAIR:AT2G45170.2); Has 1164 Blast hits to 1162 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 582; Fungi - 125; Plants - 171; Viruses - 3; Other Eukaryotes - 283 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT4G16520;
IPI: IPI00546984;
UniParc: UPI00000A405B;
REFSEQ_PROVISIONAL: NP_567504.1; NP_849395.1;
KEGG: AT4G16520;

GSPannotationmethodsrelated
AT2G03670(CDC48B)CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G45900(APG7)APG7 (AUTOPHAGY 7); APG8 activating enzymetext mining 23142983(Reconstituted Complex)
AT4G15930microtubule motortext mining 21798944(yeast-2-hybrid)
AT5G61500(ATG3)ATG3text mining 23142983(Reconstituted Complex)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT4G34660SH3 domain-containing protein 2 (SH3P2)text mining 24249832(Affinity Capture-Western)
AT2G46550hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT4G24690ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteintext mining 21606687(Reconstituted Complex)
AT5G07730hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT2G03670(CDC48B)CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingtext mining 21952135(yeast-2-hybrid)
AT4G00355hypothetical proteintext mining 25281689(FRET)
AT5G40690hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT2G35900hypothetical proteintext mining 21798944(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT4G21980No related data.
AT2G45170No related data.
AT4G04620No related data.
AT3G15580No related data.
AT1G62040No related data.
AT4G29160No related data.
AT4G27680MSP1 protein, putative / intramitochondrial sorting protein, putative
AT4G24710ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding
AT4G22670No related data.
AT4G14455No related data.
AT4G04910No related data.
AT4G04210No related data.
AT4G02195No related data.
AT3G60750transketolase, putative
AT3G60240No related data.
AT3G58170No related data.
AT3G56190No related data.
AT3G53230cell division cycle protein 48, putative / CDC48, putative
AT3G51260No related data.
AT4G31700No related data.
AT4G39080No related data.
AT5G06460No related data.
AT5G08470No related data.
AT5G16830No related data.
AT5G19320No related data.
AT5G22360No related data.
AT5G46190KH domain-containing protein
AT5G50240No related data.
AT5G57370hypothetical protein
AT5G58060No related data.
AT5G60160aspartyl aminopeptidase, putative
AT5G60640No related data.
AT5G60980nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein
AT1G03000No related data.
AT1G05350thiF family protein
AT1G11890No related data.
AT1G16260protein kinase family protein
AT1G18440peptidyl-tRNA hydrolase family protein
AT1G3312060S ribosomal protein L9 (RPL90B)
AT1G33140No related data.
AT1G64520No related data.
AT1G71840transducin family protein / WD-40 repeat family protein
AT1G76400ribophorin I family protein
AT1G80350No related data.
AT2G14120No related data.
AT2G17370No related data.
AT2G17790No related data.
AT2G21410No related data.
AT2G27600No related data.
AT2G33770No related data.
AT2G33840tRNA synthetase class I (W and Y) family protein
AT2G44140autophagy 4a (APG4a)
AT2G45200No related data.
AT2G45500ATP binding / nucleoside-triphosphatase/ nucleotide binding
AT3G01610No related data.
AT3G0556060S ribosomal protein L22-2 (RPL22B)
AT3G06720No related data.
AT3G18820No related data.
AT3G06420No related data.
AT2G05630No related data.
AT3G60640No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT4G16520No detail info. 19385720
HY5 [AT5G11260]AT4G16520 Relationship:Repressed Detected Organs:Hypocotyl 17337630

 

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210