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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:MEE58  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G13940MEE58GSP:9 PPI:50MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion binding.
Subcellar localization
chloroplast    Based on Chloroplast Proteomics data;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT4G13940.1:MATERNAL EFFECT EMBRYO ARREST 58 (MEE58); FUNCTIONS IN: adenosylhomocysteinase activity, copper ion binding; INVOLVED IN: embryonic development ending in seed dormancy, methylation-dependent chromatin silencing, one-carbon compound metabolic process, posttranscriptional gene silencing; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), NAD(P)-binding (InterPro:IPR016040), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (TAIR:AT3G23810.1); Has 6542 Blast hits to 6538 proteins in 953 species: Archae - 144; Bacteria - 1375; Metazoa - 429; Fungi - 96; Plants - 164; Viruses - 0; Other Eukaryotes - 4334 (source: NCBI BLink).

AT4G13940.2:HOMOLOGY-DEPENDENT GENE SILENCING 1 (HOG1); FUNCTIONS IN: adenosylhomocysteinase activity, copper ion binding; INVOLVED IN: embryonic development ending in seed dormancy, methylation-dependent chromatin silencing, one-carbon compound metabolic process, posttranscriptional gene silencing; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 34 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), NAD(P)-binding (InterPro:IPR016040), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (TAIR:AT3G23810.1); Has 5755 Blast hits to 5753 proteins in 953 species: Archae - 143; Bacteria - 1370; Metazoa - 421; Fungi - 96; Plants - 162; Viruses - 0; Other Eukaryotes - 3563 (source: NCBI BLink).

AT4G13940.3:HOMOLOGY-DEPENDENT GENE SILENCING 1 (HOG1); FUNCTIONS IN: adenosylhomocysteinase activity, copper ion binding; INVOLVED IN: embryonic development ending in seed dormancy, methylation-dependent chromatin silencing, one-carbon compound metabolic process, posttranscriptional gene silencing; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 34 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), NAD(P)-binding (InterPro:IPR016040), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (TAIR:AT3G23810.1); Has 6531 Blast hits to 6528 proteins in 953 species: Archae - 144; Bacteria - 1374; Metazoa - 428; Fungi - 96; Plants - 162; Viruses - 0; Other Eukaryotes - 4327 (source: NCBI BLink).

AT4G13940.4:HOMOLOGY-DEPENDENT GENE SILENCING 1 (HOG1); FUNCTIONS IN: adenosylhomocysteinase activity; INVOLVED IN: embryonic development ending in seed dormancy, methylation-dependent chromatin silencing, one-carbon compound metabolic process, posttranscriptional gene silencing; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), NAD(P)-binding (InterPro:IPR016040), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytic (TAIR:AT3G23810.1); Has 5522 Blast hits to 5520 proteins in 936 species: Archae - 142; Bacteria - 1333; Metazoa - 400; Fungi - 91; Plants - 124; Viruses - 0; Other Eukaryotes - 3432 (source: NCBI BLink).

Related Mutant  
M1721 Related gene:AT4G13940;
Method:NULL
Phenotype:(c) Mutants were identified based on infertile ovules (ken-1) or seed abortion (hog1-6, oma-1, fey-1, and ila-1). The arrows identify the defective ovules.(PMID: 17915010)
Related PO:ovule  PO:0020003          
Related Datasource Link:

M4369 Related gene:AT4G13940;
Method:T-DNA Insertion_Mutant,mutation site Intron 1
Phenotype:Embryo Defective,Globular
Related PO:embryo  PO:0009009          
Related Datasource Link:SeedGenes Database

M4370 Related gene:AT4G13940;
Method:Transposon Insertion_Mutant,mutation site Exon 1
Phenotype:Embryo Defective,Globular
Related PO:embryo  PO:0009009          
Related Datasource Link:SeedGenes Database

M4371 Related gene:AT4G13940;
Method:T-DNA Insertion_Mutant,mutation site Exon 2
Phenotype:Embryo Defective,Globular
Related PO:embryo  PO:0009009          
Related Datasource Link:SeedGenes Database
*

Predicted Mutant Phenotypes
cotyledon    PO:0020030;    seed  PO:0009010;    
Database cross-references
TAIR Gene: AT4G13940;
KEGG: AT4G13940;

GSPannotationmethodsrelated
AT3G18130(RACK1C_AT)RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G44560(VPS2.2)VPS2.2text mining 22010978(Affinity Capture-MS)
AT3G09820(ADK1)ADK1 (adenosine kinase 1); adenosine kinase/ copper ion bindingtext mining 21976714(Affinity Capture-Western)
AT3G09820(ADK1)ADK1 (adenosine kinase 1); adenosine kinase/ copper ion bindingtext mining 21976714(PCA)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 19429840(Affinity Capture-MS)
AT3G18130(RACK1C_AT)RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide bindingtext mining 21952135(yeast-2-hybrid)
AT2G18790(PHYB)PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducertext mining 23964902(Affinity Capture-MS)
AT3G23810(SAHH2)SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase/ binding / catalytictext mining 25293756(Co-fractionation)
AT3G20650mRNA capping enzyme family proteintext mining 21976714(PCA)

 

Predicted
Functional Partners
annotationTotal
AT2G36170ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)
AT3G23810No related data.
AT3G54130josephin family protein
AT3G54610No related data.
AT3G55440No related data.
AT3G57050No related data.
AT4G11820No related data.
AT4G23900nucleoside diphosphate kinase 4 (NDK4)
AT4G26110No related data.
AT4G26840No related data.
AT4G28510No related data.
AT4G29510No related data.
AT4G30890No related data.
AT4G34490No related data.
AT4G34740No related data.
AT5G03300No related data.
AT5G05920No related data.
AT5G13710No related data.
AT5G40770No related data.
AT5G44110No related data.
AT5G55160No related data.
AT1G03860No related data.
AT1G04170No related data.
AT1G11980No related data.
AT1G17160pfkB-type carbohydrate kinase family protein
AT1G61950No related data.
AT1G63700No related data.
AT1G70730phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative
AT1G75560zinc knuckle (CCHC-type) family protein
AT1G76760No related data.
AT1G79280No related data.
AT2G05210No related data.
AT2G21170No related data.
AT2G21250mannose 6-phosphate reductase (NADPH-dependent), putative
AT2G24200cytosol aminopeptidase
AT2G35040AICARFT/IMPCHase bienzyme family protein
AT3G05090transducin family protein / WD-40 repeat family protein
AT3G12050Aha1 domain-containing protein
AT3G12670No related data.
AT3G25800No related data.
AT3G33520No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
GCN5[AT3G54610]AT4G13940No detail info. 18644002
HY5[AT5G11260]AT4G13940No detail info. 18644002

 

TFFamilyConfidenceDetails
TGA1bZIPLAT5G65210