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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT4G07820  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G07820AT4G07820GSP:2 PPI:5pathogenesis-related protein, putative.
Subcellar localization
extracellular: Pubmed12444417;
Related organ
root      soluble fraction,1-DE      Related article
Representative Gene Model Description
AT4G07820.1:pathogenesis-related protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: PR1 (PATHOGENESIS-RELATED GENE 1) (TAIR:AT2G14610.1); Has 883 Blast hits to 880 proteins in 140 species: Archae - 0; Bacteria - 32; Metazoa - 153; Fungi - 114; Plants - 576; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT4G07820;
IPI: IPI00519648;
UniParc: UPI00000A9767;
REFSEQ_PROVISIONAL: NP_192524.1;
KEGG: AT4G07820;

GSPannotationmethodsrelated
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT4G33730pathogenesis-related protein, putative
AT2G14580No related data.
AT2G19990No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL3MADSLAT2G03710
ATHB1HD-ZIPLAT3G01470
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210