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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ATRPS13A  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT4G00100ATRPS13AGSP:4 PPI:177ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A); structural constituent of ribosome.
Subcellar localization
chloroplast    Based on Chloroplast Proteomics data;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
root      SDS fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Related complex
Ribosome, eukaryotes
Representative Gene Model Description
AT4G00100.1:ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A (ATRPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, cytokinesis by cell plate formation, leaf morphogenesis; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S13 (RPS13A) (TAIR:AT3G60770.1); Has 787 Blast hits to 787 proteins in 301 species: Archae - 177; Bacteria - 0; Metazoa - 232; Fungi - 99; Plants - 90; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Related Mutant  
    M4773 Related gene:AT4G00100;
    Method:RNAi
    Phenotype:leaf,PO:0009025;
    Related PO:leaf  green|leaf    
    Related Datasource Link:agrikola database
    *

    Database cross-references
    Entrez Gene: l;
    TAIR Gene: AT4G00100;
    IPI: l;
    UniProtKB/TrEMBL: l;
    UniParc: l;
    REFSEQ_PROVISIONAL: l;
    KEGG: AT4G00100;

    GSPannotationmethodsrelated
    AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
    AT3G24350(SYP32)SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptortext mining 24556609(Affinity Capture-MS)
    AT5G46630clathrin adaptor complexes medium subunit family proteintext mining 23975897(Affinity Capture-MS)
    AT5G65210(TGA1)TGA1; DNA binding / calmodulin binding / transcription factortext mining 21952135(yeast-2-hybrid)

     

    Predicted
    Functional Partners
    annotationTotal
    AT3G6077040S ribosomal protein S13 (RPS13A)
    AT1G04270No related data.
    AT1G06360fatty acid desaturase family protein
    AT1G07770No related data.
    AT1G10490hypothetical protein
    AT1G13950No related data.
    AT1G15440transducin family protein / WD-40 repeat family protein
    AT1G1593040S ribosomal protein S12 (RPS12A)
    AT1G18080No related data.
    AT1G22780No related data.
    AT1G23290No related data.
    AT1G25260acidic ribosomal protein P0-related
    AT1G2691060S ribosomal protein L10 (RPL10B)
    AT1G3312060S ribosomal protein L9 (RPL90B)
    AT1G33140No related data.
    AT1G33390helicase domain-containing protein
    AT1G3403040S ribosomal protein S18 (RPS18B)
    AT1G3624060S ribosomal protein L30 (RPL30A)
    AT1G43170No related data.
    AT1G45332mitochondrial elongation factor, putative
    AT1G48350ribosomal protein L18 family protein
    AT1G4883040S ribosomal protein S7 (RPS7A)
    AT1G56070No related data.
    AT1G60620No related data.
    AT1G62850translation release factor
    AT1G6658060S ribosomal protein L10 (RPL10C)
    AT1G6743060S ribosomal protein L17 (RPL17B)
    AT1G70600structural constituent of ribosome
    AT1G71350eukaryotic translation initiation factor SUI1 family protein
    AT1G72370No related data.
    AT1G73180eukaryotic translation initiation factor-related
    AT1G7405060S ribosomal protein L6 (RPL6C)
    AT1G75560zinc knuckle (CCHC-type) family protein
    AT1G7794060S ribosomal protein L30 (RPL30B)
    AT2G0439040S ribosomal protein S17 (RPS17A)
    AT2G0522040S ribosomal protein S17 (RPS17B)
    AT2G0999040S ribosomal protein S16 (RPS16A)
    AT2G15430No related data.
    AT2G16960importin beta-2 subunit family protein
    AT2G18020No related data.
    AT2G1975040S ribosomal protein S30 (RPS30A)
    AT2G27530No related data.
    AT2G2771060S acidic ribosomal protein P2 (RPP2B)
    AT2G31320No related data.
    AT2G3161040S ribosomal protein S3 (RPS3A)
    AT2G3222060S ribosomal protein L27 (RPL27A)
    AT2G33340nucleotide binding / ubiquitin-protein ligase
    AT2G33840tRNA synthetase class I (W and Y) family protein
    AT2G3448060S ribosomal protein L18A (RPL18aB)
    AT2G3760060S ribosomal protein L36 (RPL36A)
    AT2G3939060S ribosomal protein L35 (RPL35B)
    AT2G42520DEAD box RNA helicase, putative
    AT2G42740No related data.
    AT2G4571040S ribosomal protein S27 (RPS27A)
    AT2G47420dimethyladenosine transferase, putative
    AT2G4761060S ribosomal protein L7A (RPL7aA)
    AT2G47990No related data.
    AT3G01800ribosome recycling factor family protein / ribosome releasing factor family protein
    AT3G0208040S ribosomal protein S19 (RPS19A)
    AT3G04770No related data.
    AT3G0492040S ribosomal protein S24 (RPS24A)
    AT3G05060SAR DNA-binding protein, putative
    AT3G05590No related data.
    AT3G0920060S acidic ribosomal protein P0 (RPP0B)
    AT3G1009040S ribosomal protein S28 (RPS28A)
    AT3G10530transducin family protein / WD-40 repeat family protein
    AT3G10920No related data.
    AT3G1125060S acidic ribosomal protein P0 (RPP0C)
    AT3G1151040S ribosomal protein S14 (RPS14B)
    AT3G11940No related data.
    AT3G12860nucleolar protein Nop56, putative
    AT3G13230RNA binding
    AT3G16340No related data.
    AT3G1678060S ribosomal protein L19 (RPL19B)
    AT3G18130No related data.
    AT3G19420No related data.
    AT3G21540transducin family protein / WD-40 repeat family protein
    AT3G2339060S ribosomal protein L36a/L44 (RPL36aA)
    AT3G23620brix domain-containing protein
    AT3G2483060S ribosomal protein L13A (RPL13aB)
    AT3G25520No related data.
    AT3G26560ATP-dependent RNA helicase, putative
    AT3G4398040S ribosomal protein S29 (RPS29A)
    AT3G4401040S ribosomal protein S29 (RPS29B)
    AT3G4459060S acidic ribosomal protein P2 (RPP2D)
    AT3G4503040S ribosomal protein S20 (RPS20A)
    AT3G46040No related data.
    AT3G49010No related data.
    AT3G4991060S ribosomal protein L26 (RPL26A)
    AT3G5258040S ribosomal protein S14 (RPS14C)
    AT3G5387040S ribosomal protein S3 (RPS3B)
    AT3G5389040S ribosomal protein S21 (RPS21B)
    AT3G54210ribosomal protein L17 family protein
    AT3G55280No related data.
    AT3G55380No related data.
    AT3G5634040S ribosomal protein S26 (RPS26C)
    AT3G56990No related data.
    AT3G57000nucleolar essential protein-related
    AT3G5749040S ribosomal protein S2 (RPS2D)
    AT3G58510DEAD box RNA helicase, putative (RH11)
    AT3G6024560S ribosomal protein L37a (RPL37aC)
    AT3G62310RNA helicase, putative
    AT3G6287060S ribosomal protein L7A (RPL7aB)
    AT3G63190No related data.
    AT4G01310ribosomal protein L5 family protein
    AT4G0223060S ribosomal protein L19 (RPL19C)
    AT4G05410transducin family protein / WD-40 repeat family protein
    AT4G09800No related data.
    AT4G11420No related data.
    AT4G1432060S ribosomal protein L36a/L44 (RPL36aB)
    AT4G1500060S ribosomal protein L27 (RPL27C)
    AT4G1739060S ribosomal protein L15 (RPL15B)
    AT4G1810060S ribosomal protein L32 (RPL32A)
    AT4G20360No related data.
    AT4G22380ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
    AT4G23900nucleoside diphosphate kinase 4 (NDK4)
    AT4G25630No related data.
    AT4G2574040S ribosomal protein S10 (RPS10A)
    AT4G25880No related data.
    AT4G2623060S ribosomal protein L31 (RPL31B)
    AT4G26840No related data.
    AT4G28450nucleotide binding / protein binding
    AT4G29010No related data.
    AT4G2939040S ribosomal protein S30 (RPS30B)
    AT4G3080040S ribosomal protein S11 (RPS11B)
    AT4G30890No related data.
    AT4G31700No related data.
    AT4G3386540S ribosomal protein S29 (RPS29C)
    AT4G3455540S ribosomal protein S25, putative
    AT4G3467040S ribosomal protein S3A (RPS3aB)
    AT4G35020No related data.
    AT4G35490No related data.
    AT5G0261060S ribosomal protein L35 (RPL35D)
    AT5G0296040S ribosomal protein S23 (RPS23B)
    AT5G0385040S ribosomal protein S28 (RPS28B)
    AT5G04600RNA recognition motif (RRM)-containing protein
    AT5G0709040S ribosomal protein S4 (RPS4B)
    AT5G08420RNA binding
    AT5G0950040S ribosomal protein S15 (RPS15C)
    AT5G10270No related data.
    AT5G11900eukaryotic translation initiation factor SUI1 family protein
    AT5G13850No related data.
    AT5G14520pescadillo-related
    AT5G1520040S ribosomal protein S9 (RPS9B)
    AT5G15750RNA-binding S4 domain-containing protein
    AT5G1838040S ribosomal protein S16 (RPS16C)
    AT5G2029040S ribosomal protein S8 (RPS8A)
    AT5G2244060S ribosomal protein L10A (RPL10aC)
    AT5G23310No related data.
    AT5G2390060S ribosomal protein L13 (RPL13D)
    AT5G25780No related data.
    AT5G2785060S ribosomal protein L18 (RPL18C)
    AT5G39740No related data.
    AT5G42740glucose-6-phosphate isomerase, cytosolic (PGIC)
    AT5G4643060S ribosomal protein L32 (RPL32B)
    AT5G4770060S acidic ribosomal protein P1 (RPP1C)
    AT5G4793040S ribosomal protein S27 (RPS27D)
    AT5G51100No related data.
    AT5G5265040S ribosomal protein S10 (RPS10C)
    AT5G54940eukaryotic translation initiation factor SUI1, putative
    AT5G5667040S ribosomal protein S30 (RPS30C)
    AT5G5842040S ribosomal protein S4 (RPS4D)
    AT5G5985040S ribosomal protein S15A (RPS15aF)
    AT5G6230040S ribosomal protein S20 (RPS20C)
    AT5G63190MA3 domain-containing protein
    AT5G64140No related data.
    AT5G66100La domain-containing protein
    AT5G66540hypothetical protein
    ATCG00790No related data.
    ATCG00830No related data.
    ATCG00900No related data.
    ATCG01240No related data.
    ATCG01310No related data.

    O: Ortholog interaction datasets
    G: Shared biological function:Go Ontology
    E: Co-expression
    F: Gene fusion method
    N: Gene neighbors method
    P: Phylogenetic profile method
    D: Enriched domain pair
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    Transcriptional Regulation

    TFFamilyConfidenceDetails
    AGL1MADSLAT3G58780
    AGL3MADSLAT2G03710
    ATHB1HD-ZIPLAT3G01470
    RAV1(2)AP2/EREBPLAT1G13260