Home Contact Sitemap

AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:VAP  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G60600VAPGSP:116 PPI:136VAP (VESICLE ASSOCIATED PROTEIN); protein binding.
Subcellar localization
plasma membrane: Pubmed17317660; endoplasmic reticulum: Pubmed11907339; vacuole: Pubmed16227454;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      SDS fraction,1-DE      Related article
root      soluble fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
Representative Gene Model Description
AT3G60600.1:VESICLE ASSOCIATED PROTEIN (VAP); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: PVA12 (PLANT VAP HOMOLOG 12); structural molecule (TAIR:AT2G45140.1); Has 761 Blast hits to 744 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 101; Plants - 223; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).

AT3G60600.2:VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1 (VAP27-1); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: PVA12 (PLANT VAP HOMOLOG 12); structural molecule (TAIR:AT2G45140.1); Has 740 Blast hits to 735 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 101; Plants - 209; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

AT3G60600.3:VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1 (VAP27-1); FUNCTIONS IN: protein binding; INVOLVED IN: intracellular transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: PVA12 (PLANT VAP HOMOLOG 12); structural molecule (TAIR:AT2G45140.1); Has 740 Blast hits to 735 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 101; Plants - 209; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Database cross-references
TAIR Gene: AT3G60600;
IPI: IPI00657438; IPI00656722; IPI00532392;
UniParc: UPI00005DBF04; UPI00005DBF03; UPI00000A39D1;
REFSEQ_PROVISIONAL: NP_567101.1; NP_001030903.1; NP_001030904.1;
KEGG: AT3G60600;

GSPannotationmethodsrelated
AT5G16840(BPA1)BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductasetext mining 18845362(co-fractionation)
AT1G09070(SRC2)SRC2 (SOYBEAN GENE REGULATED BY COLD-2); protein bindingtext mining 16227454(in vitro binding assay)
AT2G34585hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G18780(ACT2)ACT2 (ACTIN 2); structural constituent of cytoskeletontext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G24120myb family transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G53990universal stress protein (USP) family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G03670(CDC48B)CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G25100(FSD1)FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G27130eukaryotic translation initiation factor SUI1, putativetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G04560(DME)DME (DEMETER); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G16600(MYB43)MYB43 (myb domain protein 43); DNA binding / transcription factortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G05000tyrosine specific protein phosphatase family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G26410hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G09580hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT4G34460(AGB1)AGB1 (GTP BINDING PROTEIN BETA 1); GTPase/ nucleotide binding / protein bindingtext mining 21952135(yeast-2-hybrid)
AT1G47530ripening-responsive protein, putativetext mining 21798944(yeast-2-hybrid)
AT2G03120(SPP)No related data.text mining 21798944(yeast-2-hybrid)
AT2G34585hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT4G35100(PIP3)PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3); water channeltext mining 21798944(yeast-2-hybrid)
AT3G01860hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT3G14410transporter-relatedtext mining 21798944(yeast-2-hybrid)
AT2G44080(ARL)ARL (ARGOS-LIKE)text mining 21798944(yeast-2-hybrid)
AT1G75630(AVA-P4)AVA-P4; ATPasetext mining 21798944(yeast-2-hybrid)
AT4G22540(ORP2A)ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A); oxysterol binding / phosphoinositide bindingtext mining 21798944(yeast-2-hybrid)
AT1G22750hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT5G16840(BPA1)BPA1 (BINDINGPARTNEROFACD11 1); nucleic acid binding / nucleotide binding / oxidoreductasetext mining 18845362(Co-fractionation)
AT1G69850(NRT1:2)No related data.text mining 21798944(yeast-2-hybrid)
AT1G13560(AAPT1)AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groupstext mining 21798944(yeast-2-hybrid)
AT2G16850(PIP2;8)PIP2;8 (PLASMA MEMBRANE INTRINSIC PROTEIN 2;8); water channeltext mining 21798944(yeast-2-hybrid)
AT4G24310hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT5G46110(APE2)APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2); antiporter/ triose-phosphate transmembrane transportertext mining 21798944(yeast-2-hybrid)
AT3G13175hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT5G23575transmembrane protein, putativetext mining 21798944(yeast-2-hybrid)
AT1G48140dolichol-phosphate mannosyltransferase-relatedtext mining 21798944(yeast-2-hybrid)
AT3G60130(BGLU16)BGLU16 (BETA GLUCOSIDASE 16); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundstext mining 21798944(yeast-2-hybrid)
AT3G58170(BS14A)BS14A (BET1P/SFT1P-LIKE PROTEIN 14A); SNAP receptor/ protein transportertext mining 21798944(yeast-2-hybrid)
AT1G17080hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT4G14950hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT3G25585(AAPT2)AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groupstext mining 21798944(yeast-2-hybrid)
AT4G32140hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT5G05760(SYP31)SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptortext mining 21798944(yeast-2-hybrid)
AT2G01770(VIT1)VIT1 (vacuolar iron transporter 1); iron ion transmembrane transportertext mining 21798944(yeast-2-hybrid)
AT5G04560(DME)DME (DEMETER); DNA N-glycosylase/ DNA-(apurinic or apyrimidinic site) lyasetext mining 21952135(yeast-2-hybrid)
AT3G20510hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT3G24120myb family transcription factortext mining 21952135(yeast-2-hybrid)
AT3G18780(ACT2)ACT2 (ACTIN 2); structural constituent of cytoskeletontext mining 21952135(yeast-2-hybrid)
AT5G08080(SYP132)SYP132 (SYNTAXIN OF PLANTS 132); SNAP receptortext mining 21798944(yeast-2-hybrid)
AT1G76670transporter-relatedtext mining 21798944(yeast-2-hybrid)
AT3G21690MATE efflux family proteintext mining 21798944(yeast-2-hybrid)
AT3G25190nodulin, putativetext mining 21798944(yeast-2-hybrid)
AT1G18720hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT5G45300(BMY2)BMY2 (BETA-AMYLASE 2); beta-amylase/ catalytic/ cation bindingtext mining 21798944(yeast-2-hybrid)
AT3G50910hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT2G33120(SAR1)SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)text mining 21798944(yeast-2-hybrid)
AT1G77350hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT2G16800high-affinity nickel-transport family proteintext mining 21798944(yeast-2-hybrid)
AT2G34380hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 21798944(yeast-2-hybrid)
AT2G02990(RNS1)RNS1 (RIBONUCLEASE 1); endoribonuclease/ ribonucleasetext mining 21798944(yeast-2-hybrid)
AT5G16600(MYB43)MYB43 (myb domain protein 43); DNA binding / transcription factortext mining 21952135(yeast-2-hybrid)
AT1G77610glucose-6-phosphate/phosphate translocator-relatedtext mining 21798944(yeast-2-hybrid)
AT2G37180(RD28)RD28 (RESPONSIVE TO DESICCATION 28); water channeltext mining 21798944(yeast-2-hybrid)
AT3G50920phosphatidic acid phosphatase-related / PAP2-relatedtext mining 21798944(yeast-2-hybrid)
AT4G27130eukaryotic translation initiation factor SUI1, putativetext mining 21952135(yeast-2-hybrid)
AT5G18150hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT1G75880family II extracellular lipase 1 (EXL1)text mining 21798944(yeast-2-hybrid)
AT3G60590hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT4G25100(FSD1)FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutasetext mining 21952135(yeast-2-hybrid)
AT5G07250(RBL3)No related data.text mining 21798944(yeast-2-hybrid)
AT5G22290(NAC089)No related data.text mining 21798944(yeast-2-hybrid)
AT2G47770(TSPO)No related data.text mining 21798944(yeast-2-hybrid)
AT2G03670(CDC48B)CDC48B; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingtext mining 21952135(yeast-2-hybrid)
AT3G28050nodulin MtN21 family proteintext mining 21798944(yeast-2-hybrid)
AT2G31490hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT1G62880cornichon family proteintext mining 21798944(yeast-2-hybrid)
AT3G58460(RBL15)No related data.text mining 21798944(yeast-2-hybrid)
AT3G63200(PLP9)PLP9 (PATATIN-LIKE PROTEIN 9); nutrient reservoirtext mining 21798944(yeast-2-hybrid)
AT1G12390cornichon family proteintext mining 21798944(yeast-2-hybrid)
AT5G43460lesion inducing protein-relatedtext mining 21798944(yeast-2-hybrid)
AT1G75500(WAT1)No related data.text mining 21798944(yeast-2-hybrid)
AT4G40042peptidasetext mining 21798944(yeast-2-hybrid)
AT4G19030(NLM1)NLM1; arsenite transmembrane transporter/ water channeltext mining 21798944(yeast-2-hybrid)
AT1G05000tyrosine specific protein phosphatase family proteintext mining 21952135(yeast-2-hybrid)
AT3G57090(BIGYIN)BIGYIN; bindingtext mining 21798944(yeast-2-hybrid)
AT4G26410hypothetical proteintext mining 21952135(yeast-2-hybrid)
AT5G51010rubredoxin family proteintext mining 21798944(yeast-2-hybrid)
AT1G63120(RBL2)No related data.text mining 21798944(yeast-2-hybrid)
AT3G54020(AtIPCS1)No related data.text mining 21798944(yeast-2-hybrid)
AT5G61340hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT1G28250hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT5G17700MATE efflux family proteintext mining 21798944(yeast-2-hybrid)
AT4G35080high-affinity nickel-transport family proteintext mining 21798944(yeast-2-hybrid)
AT3G53990universal stress protein (USP) family proteintext mining 21952135(yeast-2-hybrid)
AT3G15820(ROD1)No related data.text mining 21798944(yeast-2-hybrid)
AT1G03630(POR C)No related data.text mining 21798944(yeast-2-hybrid)
AT5G24290integral membrane family proteintext mining 21798944(yeast-2-hybrid)
AT1G21790hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT5G53560(CB5-E)CB5-E (CYTOCHROME B5 ISOFORM E); heme bindingtext mining 21798944(yeast-2-hybrid)
AT1G52870peroxisomal membrane protein-relatedtext mining 21798944(yeast-2-hybrid)
AT2G43510(TI1)No related data.text mining 21798944(yeast-2-hybrid)
AT2G32380hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT5G19875hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT5G56020hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT4G26450hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT3G10260reticulon family proteintext mining 21798944(yeast-2-hybrid)
AT1G14360(UTR3)UTR3 (UDP-GALACTOSE TRANSPORTER 3); pyrimidine nucleotide sugar transmembrane transportertext mining 21798944(yeast-2-hybrid)
AT1G55535hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT4G38250amino acid transporter family proteintext mining 21798944(yeast-2-hybrid)
AT5G16150(PGLCT)PGLCT (PLASTIDIC GLC TRANSLOCATOR); carbohydrate transmembrane transporter/ sugar:hydrogen symportertext mining 21798944(yeast-2-hybrid)
AT5G12880proline-rich family proteintext mining 21798944(yeast-2-hybrid)
AT3G29034hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT4G17340(TIP2;2)TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channeltext mining 21798944(yeast-2-hybrid)
AT1G48240(NPSN12)ATNPSN12; protein transportertext mining 21798944(yeast-2-hybrid)
AT1G04340lesion inducing protein-relatedtext mining 21798944(yeast-2-hybrid)
AT1G29240hypothetical proteintext mining 21798944(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT5G58060No related data.
AT5G47180vesicle-associated membrane family protein / VAMP family protein
AT5G22360No related data.
AT5G05080No related data.
AT5G05010clathrin adaptor complexes medium subunit-related
AT4G39670glycolipid binding / glycolipid transporter
AT4G32360NADP adrenodoxin-like ferredoxin reductase
AT4G14455No related data.
AT4G03330No related data.
AT4G01370No related data.
AT3G57870No related data.
AT3G46460No related data.
AT3G26618No related data.
AT3G24350No related data.
AT3G17611No related data.
AT2G45200No related data.
AT2G38670No related data.
AT2G22240No related data.
AT1G11890No related data.
AT1G01230ORMDL family protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
TGA1bZIPLAT5G65210