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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:SHP1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G58780SHP1GSP:28 PPI:30SHP1 (SHATTERPROOF 1); DNA binding / protein binding / transcription factor.
Subcellar localization
nucleus: Pubmed16381842;
Representative Gene Model Description
AT3G58780.1:SHATTERPROOF 1 (SHP1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: fruit dehiscence, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP2 (SHATTERPROOF 2); protein binding / transcription factor (TAIR:AT2G42830.1); Has 5287 Blast hits to 5283 proteins in 695 species: Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 209; Plants - 4453; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

AT3G58780.2:SHATTERPROOF 1 (SHP1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: fruit dehiscence, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SHP2 (SHATTERPROOF 2); protein binding / transcription factor (TAIR:AT2G42830.1); Has 5241 Blast hits to 5238 proteins in 691 species: Archae - 0; Bacteria - 0; Metazoa - 554; Fungi - 209; Plants - 4422; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

Related Mutant  
M4993 Related gene:AT4G09960; AT3G58780; AT2G42830;
Method:NULL
Phenotype:However, from stage 12, the ovule integuments began to present defects (cf. Figures 1C and 1G), and some of them clearly switched to a different developmental program and developed into wide carpel-like structures (Figure 1H). The majority of the mature ovules showed various defects in integument development (Figure 1I).(PMID: 17693535)
Related PO:ovule  PO:0020003          
Related Datasource Link:
*

Predicted Mutant Phenotypes
shoot apical meristem    PO:0020148;    stamen  PO:0009029;    petal    PO:0009032;    pedicel  PO:0009052;    carpel    PO:0009030;    root apical meristem  PO:0020147;    inflorescence meristem    PO:0000230;    
Database cross-references
TAIR Gene: AT3G58780;
KEGG: AT3G58780;

GSPannotationmethodsrelated
AT4G37940(AGL21)AGL21; transcription factortext mining 15805477()
AT5G41315(GL3)GL3 (GLABROUS 3); protein binding / transcription factortext mining 15231736(NULL)
AT4G24540(AGL24)AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factortext mining 15805477()
AT5G13790(AGL15)AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factortext mining 15805477()
AT4G09960(STK)STK (SEEDSTICK); protein binding / transcription factortext mining 14555696(yeast-2-hybrid assay)
AT1G65330(PHE1)PHE1 (PHERES1); DNA binding / transcription factortext mining 15231736(NULL)
AT1G48150MADS-box protein (AGL74 )text mining 15805477()
AT4G18960(AG)AG (AGAMOUS); DNA binding / transcription factortext mining 14555696(yeast-2-hybrid assay)
AT3G57230(AGL16)AGL16 (AGAMOUS-LIKE 16); transcription factortext mining 15805477()
AT2G45660(AGL20)AGL20 (AGAMOUS-LIKE 20); transcription factortext mining 15805477()
AT4G11880(AGL14)AGL14 (agamous-like 14); DNA binding / transcription factortext mining 15805477(yeast-2-hybrid assay)
AT2G42830(SHP2)SHP2 (SHATTERPROOF 2); protein binding / transcription factortext mining 14555696(yeast-2-hybrid assay)
AT3G61120(AGL13)AGL13 (AGAMOUS-LIKE 13); DNA binding / transcription factortext mining 15805477()
AT5G23260(TT16)TT16 (TRANSPARENT TESTA16); transcription factortext mining 16925602(3 hybrid method)
AT1G24260(SEP3)SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factortext mining 14555696(yeast-2-hybrid assay)
AT5G15800(SEP1)SEP1 (STRESS ENHANCED PROTEIN 1); chlorophyll bindingtext mining 15805477()
AT2G45660(AGL20)AGL20 (AGAMOUS-LIKE 20); transcription factortext mining 15805477(yeast-2-hybrid)
AT1G24260(42616)No related data.text mining 15805477(yeast-2-hybrid)
AT5G13790(AGL15)AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT1G48150MADS-box protein (AGL74 )text mining 15805477(yeast-2-hybrid)
AT4G24540(AGL24)AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT4G37940(AGL21)AGL21; transcription factortext mining 15805477(yeast-2-hybrid)
AT3G61120(AGL13)AGL13 (AGAMOUS-LIKE 13); DNA binding / transcription factortext mining 15805477(yeast-2-hybrid)
AT4G18960(AG)AG (AGAMOUS); DNA binding / transcription factortext mining 22238427(Affinity Capture-MS)
AT1G24260(42616)No related data.text mining 16080001(yeast-2-hybrid)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT3G57230(AGL16)AGL16 (AGAMOUS-LIKE 16); transcription factortext mining 15805477(yeast-2-hybrid)
AT5G15800(42614)No related data.text mining 15805477(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT2G42830No related data.
AT4G36590MADS-box protein (AGL40)

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT3G58780No detail info. 19385720

 

TFFamilyConfidenceDetails
AGL15MADSLAT5G13790
AGL3MADSLAT2G03710
ARR10GARPLAT4G31920
RAV1(2)AP2/EREBPLAT1G13260