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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:SZF1  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G55980SZF1GSP:2 PPI:4SZF1 (SALT-INDUCIBLE ZINC FINGER 1); transcription factor.
Subcellar localization
nucleus: Pubmed12444417;
Representative Gene Model Description
AT3G55980.1:SALT-INDUCIBLE ZINC FINGER 1 (SZF1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CZF1; transcription factor (TAIR:AT2G40140.2); Has 1281 Blast hits to 1076 proteins in 129 species: Archae - 2; Bacteria - 37; Metazoa - 725; Fungi - 18; Plants - 246; Viruses - 2; Other Eukaryotes - 251 (source: NCBI BLink).

Related Mutant  
M3963 Related gene:AT3G55980;
Method:insertion site: 20784129
Phenotype:embryo lethal
Related PO:embryo  PO:0009009          
Related Datasource Link:CSHL database
*

Database cross-references
TAIR Gene: AT3G55980;
KEGG: AT3G55980;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT2G40140No related data.
AT5G58620zinc finger (CCCH-type) family protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT3G55980No detail info. 19385720
HY5 [AT5G11260]AT3G55980 Relationship:Induced Detected Organs:Hypocotyl 17337630
HY5 [AT5G11260]AT3G55980 Relationship:Induced Detected Organs:Root 17337630

 

TFFamilyConfidenceDetails
AGMADSLAT4G18960
AGL1MADSLAT3G58780
AGL15MADSLAT5G13790
ARR10GARPLAT4G31920
ATHB1HD-ZIPHAT3G01470
ATHB5HD-ZIPHAT5G65310
GT-3bTrihelixLAT5G01380
ID1C2H2(Zn)LAT1G25250
RAV1(2)AP2/EREBPHAT1G13260
TGA1bZIPHAT5G65210
WRKY18WRKY(Zn)HAT4G31800

Related PPIs for TFs
TF1TF2PPI
AT4G18960AT3G58780GO
AT4G18960AT5G13790GO
AT3G58780AT5G13790GO