Home Contact Sitemap

AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT3G55430  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G55430AT3G55430GSP:2 PPI:3glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative.
Subcellar localization
extracellular: Pubmed15593128;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      SDS fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
Representative Gene Model Description
AT3G55430.1:glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT2G39640.1); Has 1789 Blast hits to 1736 proteins in 128 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 34; Plants - 1749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT3G55430;
IPI: IPI00544198;
UniParc: UPI0000048868;
REFSEQ_PROVISIONAL: NP_191103.1;
KEGG: AT3G55430;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT2G16230catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
ABF1bZIPLAT1G49720
AGL3MADSHAT2G03710
ARR1GARP/ARR-BHAT3G16857
ARR2GARP/ARR-BLAT4G16110
ATHB1HD-ZIPLAT3G01470
DREB1AAP2/EREBPHAT4G25480
DREB2AAP2/EREBPHAT5G05410
RAP2.2AP2/EREBPLAT3G14230
RAV1(2)AP2/EREBPHAT1G13260

Related PPIs for TFs
TF1TF2PPI
AT4G25480AT5G05410GO