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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT3G53990  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G53990AT3G53990GSP:14 PPI:21universal stress protein (USP) family protein.
Related organ
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cotyledon      soluble fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
flower bud      soluble fraction,1-DE      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT3G53990.1:universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein / early nodulin ENOD18 family protein (TAIR:AT3G03270.2); Has 2509 Blast hits to 2475 proteins in 563 species: Archae - 245; Bacteria - 1658; Metazoa - 47; Fungi - 64; Plants - 395; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).

AT3G53990.2:universal stress protein (USP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein / early nodulin ENOD18 family protein (TAIR:AT3G03270.2); Has 126 Blast hits to 126 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT3G53990;
IPI: IPI00543924; IPI00529218;
UniParc: UPI00000A713F; UPI000009EADB;
REFSEQ_PROVISIONAL: NP_566991.2; NP_974427.1;
KEGG: AT3G53990;

GSPannotationmethodsrelated
AT3G59220(PRN)PRN (PIRIN); calmodulin bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G18130(RACK1C_AT)RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G14240hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G17730(SYP23)SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptortext mining 21952135(yeast-2-hybrid)
AT3G59220(PRN)PRN (PIRIN); calmodulin bindingtext mining 21952135(yeast-2-hybrid)
AT3G53990universal stress protein (USP) family proteintext mining 21798944(yeast-2-hybrid)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT3G60600(VAP)VAP (VESICLE ASSOCIATED PROTEIN); protein bindingtext mining 21952135(yeast-2-hybrid)
AT3G18130(RACK1C_AT)RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide bindingtext mining 21952135(yeast-2-hybrid)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT5G14240hypothetical proteintext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G68300universal stress protein (USP) family protein
AT3G03270universal stress protein (USP) family protein / early nodulin ENOD18 family protein
AT3G17020universal stress protein (USP) family protein
AT1G09740ethylene-responsive protein, putative
AT5G14680universal stress protein (USP) family protein
AT2G47710universal stress protein (USP) family protein
AT3G62550universal stress protein (USP) family protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGMADSLAT4G18960
AGL1MADSLAT3G58780
ARR10GARPLAT4G31920
ATHB1HD-ZIPHAT3G01470
ATHB5HD-ZIPLAT5G65310
RAV1(2)AP2/EREBPHAT1G13260

Related PPIs for TFs
TF1TF2PPI
AT4G18960AT3G58780GO