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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:RPL12-C  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G27850RPL12-CGSP:3 PPI:14RPL12-C (ribosomal protein l12-c); structural constituent of ribosome.
Subcellar localization
plastid: Pubmed12444417;
Related complex
Ribosome, bacteria
Representative Gene Model Description
AT3G27850.1:ribosomal protein l12-c (RPL12-C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: defense response to bacterium, translation; LOCATED IN: in 6 components; EXPRESSED IN: juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome (TAIR:AT3G27830.1); Has 5867 Blast hits to 5867 proteins in 1568 species: Archae - 0; Bacteria - 3215; Metazoa - 132; Fungi - 84; Plants - 175; Viruses - 0; Other Eukaryotes - 2261 (source: NCBI BLink).

Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT3G27850;
IPI: IPI00540051;
UniParc: UPI00000014F4;
REFSEQ_PROVISIONAL: NP_189423.1;
KEGG: AT3G27850;

GSPannotationmethodsrelated
AT5G14240hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 19429840(Affinity Capture-MS)
AT5G14240hypothetical proteintext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G2691060S ribosomal protein L10 (RPL10B)
AT1G3312060S ribosomal protein L9 (RPL90B)
AT1G33140No related data.
AT1G43170No related data.
AT1G45332mitochondrial elongation factor, putative
AT1G48350ribosomal protein L18 family protein
AT3G0920060S acidic ribosomal protein P0 (RPP0B)
AT3G25520No related data.
AT4G01310ribosomal protein L5 family protein
AT5G40950No related data.
AT3G27840No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL3MADSLAT2G03710
ATHB5HD-ZIPLAT5G65310
PIF3(2)bHLHLAT1G09530
RAV1(2)AP2/EREBPLAT1G13260
WRKY18WRKY(Zn)LAT4G31800