Home Contact Sitemap

AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT3G19760  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G19760AT3G19760GSP:6 PPI:177eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative.
Subcellar localization
nucleus: Pubmed14617066;
Related organ
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      triton fraction,Schagger 1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower      soluble fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT3G19760.1:eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: nucleolus, nucleus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A, putative / eIF-4A, putative (TAIR:AT1G51380.1); Has 32402 Blast hits to 31825 proteins in 1817 species: Archae - 512; Bacteria - 14379; Metazoa - 5291; Fungi - 3422; Plants - 1433; Viruses - 38; Other Eukaryotes - 7327 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT3G19760;
IPI: IPI00522986;
UniParc: UPI0000163476;
REFSEQ_PROVISIONAL: NP_188610.1;
KEGG: AT3G19760;

GSPannotationmethodsrelated
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G37720(ALY4)No related data.text mining 19435936(Reconstituted Complex)
AT1G02140(MAGO)MAGO (MAGO NASHI); protein bindingtext mining 19435936(yeast-2-hybrid)
AT1G51510(Y14)Y14; RNA binding / protein bindingtext mining 19435936(yeast-2-hybrid)
AT4G30840WD-40 repeat protein familytext mining 21189294(Affinity Capture-MS)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT3G02065DEAD/DEAH box helicase family protein
AT5G11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding
AT5G11200DEAD/DEAH box helicase, putative
AT3G53110No related data.
AT1G51380eukaryotic translation initiation factor 4A, putative / eIF-4A, putative
AT5G60990DEAD/DEAH box helicase, putative (RH10)
AT1G16280DEAD/DEAH box helicase, putative
AT1G72730eukaryotic translation initiation factor 4A, putative / eIF-4A, putative
AT1G04270No related data.
AT1G07270cell division control protein CDC6b, putative (CDC6b)
AT1G07770No related data.
AT1G08130No related data.
AT1G10490hypothetical protein
AT1G10580transducin family protein / WD-40 repeat family protein
AT1G10840No related data.
AT1G12650hypothetical protein
AT1G12770No related data.
AT1G13120No related data.
AT1G14650SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
AT1G22780No related data.
AT1G25260acidic ribosomal protein P0-related
AT1G29900No related data.
AT1G30580GTP binding
AT1G31810actin binding
AT1G3312060S ribosomal protein L9 (RPL90B)
AT1G33140No related data.
AT1G33980No related data.
AT1G3403040S ribosomal protein S18 (RPS18B)
AT1G48410No related data.
AT1G49760No related data.
AT1G50030No related data.
AT1G50920GTP-binding protein-related
AT1G52930brix domain-containing protein
AT1G52980GTP-binding family protein
AT1G56070No related data.
AT1G56110No related data.
AT1G59910formin homology 2 domain-containing protein / FH2 domain-containing protein
AT1G60170No related data.
AT1G60620No related data.
AT1G60900U2 snRNP auxiliary factor large subunit, putative
AT1G65650No related data.
AT1G6743060S ribosomal protein L17 (RPL17B)
AT1G73180eukaryotic translation initiation factor-related
AT1G7427060S ribosomal protein L35a (RPL35aC)
AT1G77180chromatin protein family
AT1G80070No related data.
AT1G80680No related data.
AT1G80930MIF4G domain-containing protein / MA3 domain-containing protein
AT2G03870small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
AT2G13540No related data.
AT2G15430No related data.
AT2G18020No related data.
AT2G18220hypothetical protein
AT2G20060ribosomal protein L4 family protein
AT2G20490No related data.
AT2G21440RNA recognition motif (RRM)-containing protein
AT2G25050formin homology 2 domain-containing protein / FH2 domain-containing protein
AT2G27530No related data.
AT2G27960No related data.
AT2G27970No related data.
AT2G29210splicing factor PWI domain-containing protein
AT2G3161040S ribosomal protein S3 (RPS3A)
AT2G3448060S ribosomal protein L18A (RPL18aB)
AT2G36010No related data.
AT2G37990ribosome biogenesis regulatory protein (RRS1) family protein
AT2G38560No related data.
AT2G38960No related data.
AT2G39770No related data.
AT2G39990No related data.
AT2G40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative
AT2G42520DEAD box RNA helicase, putative
AT2G42740No related data.
AT2G44520No related data.
AT3G01160hypothetical protein
AT3G02590delta 7-sterol-C5-desaturase, putative
AT3G03710No related data.
AT3G03920Gar1 RNA-binding region family protein
AT3G05060SAR DNA-binding protein, putative
AT3G05470formin homology 2 domain-containing protein / FH2 domain-containing protein
AT3G05590No related data.
AT3G07050GTP-binding family protein
AT3G08850No related data.
AT3G0920060S acidic ribosomal protein P0 (RPP0B)
AT3G0963060S ribosomal protein L4/L1 (RPL4A)
AT3G09720DEAD/DEAH box helicase, putative
AT3G12110No related data.
AT3G12670No related data.
AT3G1358060S ribosomal protein L7 (RPL7D)
AT3G14080small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
AT3G16810No related data.
AT3G18524No related data.
AT3G22660rRNA processing protein-related
AT3G23620brix domain-containing protein
AT3G25500No related data.
AT3G25520No related data.
AT3G25800No related data.
AT3G26560ATP-dependent RNA helicase, putative
AT3G4503040S ribosomal protein S20 (RPS20A)
AT3G47120RNA recognition motif (RRM)-containing protein
AT3G47450No related data.
AT3G4991060S ribosomal protein L26 (RPL26A)
AT3G55280No related data.
AT3G55380No related data.
AT3G55620No related data.
AT3G56150No related data.
AT3G56990No related data.
AT3G57000nucleolar essential protein-related
AT3G60240No related data.
AT4G02450glycine-rich protein
AT4G03120proline-rich family protein
AT4G09800No related data.
AT4G11420No related data.
AT4G15850No related data.
AT4G16970ATP binding / kinase/ protein kinase/ protein serine/threonine kinase
AT4G18040No related data.
AT4G19210No related data.
AT4G20360No related data.
AT4G20980eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative
AT4G22285ubiquitin thiolesterase/ zinc ion binding
AT4G24190No related data.
AT4G25540No related data.
AT4G25630No related data.
AT4G27640importin beta-2 subunit family protein
AT4G28200hypothetical protein
AT4G31050lipoyltransferase (LIP2p)
AT4G31770calcineurin-like phosphoesterase family protein
AT4G37910No related data.
AT5G02530RNA and export factor-binding protein, putative
AT5G03415No related data.
AT5G04600RNA recognition motif (RRM)-containing protein
AT5G06360ribosomal protein S8e family protein
AT5G08420RNA binding
AT5G14520pescadillo-related
AT5G14580polyribonucleotide nucleotidyltransferase, putative
AT5G16780No related data.
AT5G17900hypothetical protein
AT5G18110No related data.
AT5G1838040S ribosomal protein S16 (RPS16C)
AT5G19210DEAD/DEAH box helicase, putative
AT5G2029040S ribosomal protein S8 (RPS8A)
AT5G2244060S ribosomal protein L10A (RPL10aC)
AT5G2390060S ribosomal protein L13 (RPL13D)
AT5G2785060S ribosomal protein L18 (RPL18C)
AT5G35620No related data.
AT5G359103'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein
AT5G39400No related data.
AT5G39740No related data.
AT5G40820No related data.
AT5G45330hypothetical protein
AT5G45900No related data.
AT5G47010No related data.
AT5G50320No related data.
AT5G52640No related data.
AT5G54650No related data.
AT5G55160No related data.
AT5G56030No related data.
AT5G57870eukaryotic translation initiation factor 4F, putative / eIF-4F, putative
AT5G58160actin binding
AT5G5985040S ribosomal protein S15A (RPS15aF)
AT5G60790No related data.
AT5G60980nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein
AT5G61770No related data.
AT5G6230040S ribosomal protein S20 (RPS20C)
AT5G67470formin homology 2 domain-containing protein / FH2 domain-containing protein
ATCG00160No related data.
ATCG00830No related data.
ATCG01310No related data.
ATMG00730No related data.
AT1G54270No related data.
AT3G13920No related data.
AT5G11010pre-mRNA cleavage complex-related

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)