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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:PUB29  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G18710PUB29GSP:6 PPI:8PUB29 (PLANT U-BOX 29); ubiquitin-protein ligase.
Representative Gene Model Description
AT3G18710.1:PLANT U-BOX 29 (PUB29); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to chitin, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT5G09800.1); Has 1141 Blast hits to 1131 proteins in 70 species: Archae - 0; Bacteria - 12; Metazoa - 125; Fungi - 0; Plants - 908; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT3G18710;
IPI: IPI00545400;
UniParc: UPI00000A2167;
REFSEQ_PROVISIONAL: NP_188501.1;
KEGG: AT3G18710;

GSPannotationmethodsrelated
AT4G21380(ARK3)ARK3 (A. THALIANA RECEPTOR KINASE 3); kinase/ transmembrane receptor protein serine/threonine kinasetext mining 18552232(yeast-2-hybrid assay)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G21380(RK3)No related data.text mining 18552232(yeast-2-hybrid)
AT2G16740(UBC29)UBC29 (ubiquitin-conjugating enzyme 29); ubiquitin-protein ligasetext mining 21798944(yeast-2-hybrid)
AT5G22310hypothetical proteintext mining 21798944(yeast-2-hybrid)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G66160U-box domain-containing protein
AT5G64660U-box domain-containing protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
SEPALLATA3[AT1G24260]AT3G18710No detail info. 19385720

 

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
AGL3MADSLAT2G03710
ARR10GARPLAT4G31920
ATHB1HD-ZIPLAT3G01470
RAV1(2)AP2/EREBPHAT1G13260
TGA1bZIPHAT5G65210
WRKY18WRKY(Zn)HAT4G31800
WRKY40WRKY(Zn)HAT1G80840

Related PPIs for TFs
TF1TF2PPI
AT4G31800AT1G80840GO