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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:RACK1C_AT  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G18130RACK1C_ATGSP:50 PPI:210RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding.
Subcellar localization
nucleus: Pubmed15496452;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      soluble fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      SDS fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Representative Gene Model Description
AT3G18130.1:RECEPTOR FOR ACTIVATED C KINASE 1 C (RACK1C_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding (TAIR:AT1G48630.1); Has 65242 Blast hits to 27312 proteins in 714 species: Archae - 56; Bacteria - 6807; Metazoa - 29683; Fungi - 13105; Plants - 6052; Viruses - 6; Other Eukaryotes - 9533 (source: NCBI BLink).

Related Mutant  
M2173 Related gene:AT3G18130;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:Similar to rack1b mutants but unlike rack1a mutants, rack1c mutants do not display any apparent defects in plant development (Figure ?(Figure2C2C).(PMID: 18947417)
Related Datasource Link:

M2176 Related gene:AT1G18080; AT3G18130;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:We found that while rack1b-2 and rack1c-1 single mutants produced wild-type number of rosette leaves, both rack1b-2 and rack1c-1 significantly enhanced the phenotype of reduced number of rosette leaves of rack1a-1 single mutants (Figure 3A, B).Under these conditions, rack1a-1 rack1b-2 and rack1a-1 rack1c-1 double mutants only produced about 16 and 19 rosette leaves, respectively (Figure ?(Figure3B)(PMID: 18947417)
Related PO:rosette leaf  PO:0000014          
Related Datasource Link:

M2177 Related gene:AT1G18080; AT1G48630; AT3G18130;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:Subsequently, we generated rack1a-1 rack1b-2 rack1c-1 triple mutant. Very few triple mutants could survive in soil. For those survived, they were extremely slow in growth and development, and produced fewest rosette leaves and smallest rosette size among all genotypes examined (Figure 3A芒鈧淒)(PMID: 18947417)
Related PO:rosette leaf  PO:0000014          
Related Datasource Link:

M2178 Related gene:AT1G48630; AT3G18130;
Method:In rack1b-1 allele, the T-DNA was inserted in the second exon of RACK1B gene, and in the rack1b-2 allele, the T-DNA was inserted in the first intron ;In rack1c-1 allele, the T-DNA was inserted in the second exon of RACK1C gene, and in the rack1c-2 allele,???
Phenotype:Interestingly, no synergistic effect was observed between rack1b-2 and rack1c-1 mutations. Statistically, rack1b-2 rack1c-1 double mutants phenocopied parental single mutants and displayed wild-type traits of these phenotypes (Figure 3A, B)(PMID: 18947417)
Related Datasource Link:
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Database cross-references
TAIR Gene: AT3G18130;
KEGG: AT3G18130;

GSPannotationmethodsrelated
AT1G08200(AXS2)AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2); UDP-glucuronate decarboxylasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G22920(CSN5A)CSN5A (COP9 SIGNALOSOME 5A)text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G68410protein phosphatase 2C-related / PP2C-relatedtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G78380(ATGSTU19)ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19); glutathione binding / glutathione transferasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G01140fructose-bisphosphate aldolase, putativetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G22880VQ motif-containing proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G27860(AXS1)AXS1 (UDP-D-apiose/UDP-D-xylose synthase 1); NAD or NADH binding / UDP-glucuronate decarboxylasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G29080(ftsh3)ftsh3 (FtsH protease 3); ATP-dependent peptidase/ ATPasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G44310calcium-binding EF hand family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT2G47090nucleic acid binding / protein binding / zinc ion bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G02230(RGP1)RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming)text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G20830protein kinase family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G25150nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G53990universal stress protein (USP) family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G56410hypothetical proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G13940(MEE58)MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT4G37540(LBD39)LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)text mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G06110DNAJ heat shock N-terminal domain-containing protein / cell division protein-relatedtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G09650(AtPPa6)AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6); inorganic diphosphatase/ pyrophosphatasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G14430dehydration-responsive protein-relatedtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G41990(WNK8)WNK8 (WITH NO LYSINE (K) KINASE 8); kinase/ protein kinasetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G51190AP2 domain-containing transcription factor, putativetext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G65780(ATBCAT-5)ATBCAT-5; branched-chain-amino-acid transaminase/ catalytictext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT1G78380(GSTU19)No related data.text mining 21952135(yeast-2-hybrid)
AT3G20830protein kinase family proteintext mining 21952135(yeast-2-hybrid)
AT5G06110DNAJ heat shock N-terminal domain-containing protein / cell division protein-relatedtext mining 21952135(yeast-2-hybrid)
AT1G08200(AXS2)AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2); UDP-glucuronate decarboxylasetext mining 21952135(yeast-2-hybrid)
AT2G29080(ftsh3)ftsh3 (FtsH protease 3); ATP-dependent peptidase/ ATPasetext mining 21952135(yeast-2-hybrid)
AT5G41990(WNK8)WNK8 (WITH NO LYSINE (K) KINASE 8); kinase/ protein kinasetext mining 25489024(Biochemical Activity)
AT1G22920(CSN5A)CSN5A (COP9 SIGNALOSOME 5A)text mining 21952135(yeast-2-hybrid)
AT2G01140fructose-bisphosphate aldolase, putativetext mining 21952135(yeast-2-hybrid)
AT4G37540(LBD39)LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)text mining 21952135(yeast-2-hybrid)
AT2G22880VQ motif-containing proteintext mining 21952135(yeast-2-hybrid)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT5G65780(ATBCAT-5)ATBCAT-5; branched-chain-amino-acid transaminase/ catalytictext mining 21952135(yeast-2-hybrid)
AT5G41990(WNK8)WNK8 (WITH NO LYSINE (K) KINASE 8); kinase/ protein kinasetext mining 25489024(yeast-2-hybrid)
AT5G51190AP2 domain-containing transcription factor, putativetext mining 21952135(yeast-2-hybrid)
AT2G47090nucleic acid binding / protein binding / zinc ion bindingtext mining 21952135(yeast-2-hybrid)
AT2G27100(SE)SE (SERRATE); DNA binding / transcription factortext mining 23941160(yeast-2-hybrid)
AT5G09650(PPa6)No related data.text mining 21952135(yeast-2-hybrid)
AT3G25150nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteintext mining 21952135(yeast-2-hybrid)
AT3G02230(RGP1)RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming)text mining 21952135(yeast-2-hybrid)
AT4G13940(MEE58)MEE58 (MATERNAL EFFECT EMBRYO ARREST 58); adenosylhomocysteinase/ copper ion bindingtext mining 21952135(yeast-2-hybrid)
AT1G68410protein phosphatase 2C-related / PP2C-relatedtext mining 21952135(yeast-2-hybrid)
AT4G35470(PIRL4)No related data.text mining 21798944(yeast-2-hybrid)
AT2G27860(AXS1)AXS1 (UDP-D-apiose/UDP-D-xylose synthase 1); NAD or NADH binding / UDP-glucuronate decarboxylasetext mining 21952135(yeast-2-hybrid)
AT3G53990universal stress protein (USP) family proteintext mining 21952135(yeast-2-hybrid)
AT5G14430dehydration-responsive protein-relatedtext mining 21952135(yeast-2-hybrid)
AT2G44310calcium-binding EF hand family proteintext mining 21952135(yeast-2-hybrid)
AT3G56410hypothetical proteintext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT1G48630No related data.
AT5G61240protein binding
AT5G48180No related data.
AT4G32950protein phosphatase 2C, putative / PP2C, putative
AT4G38460No related data.
AT1G07030mitochondrial substrate carrier family protein
AT1G59960aldo/keto reductase, putative
AT3G59480pfkB-type carbohydrate kinase family protein
AT4G27800protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)
AT3G06060short-chain dehydrogenase/reductase (SDR) family protein
AT1G21780BTB/POZ domain-containing protein
AT1G03190No related data.
AT1G04170No related data.
AT1G04270No related data.
AT1G07770No related data.
AT1G09020No related data.
AT1G21270No related data.
AT1G22780No related data.
AT1G29990No related data.
AT1G30825No related data.
AT1G3403040S ribosomal protein S18 (RPS18B)
AT1G43860transcription factor
AT1G47210No related data.
AT1G48410No related data.
AT1G4883040S ribosomal protein S7 (RPS7A)
AT1G49760No related data.
AT1G50030No related data.
AT1G50920GTP-binding protein-related
AT1G52740No related data.
AT1G54290eukaryotic translation initiation factor SUI1, putative
AT1G55310No related data.
AT1G55520No related data.
AT1G56070No related data.
AT1G56110No related data.
AT1G60170No related data.
AT1G69220No related data.
AT1G71230No related data.
AT1G71350eukaryotic translation initiation factor SUI1 family protein
AT1G72370No related data.
AT1G73820Ssu72-like family protein
AT1G7599026S proteasome regulatory subunit S3, putative (RPN3)
AT1G76760No related data.
AT1G77670aminotransferase class I and II family protein
AT1G79550No related data.
AT1G80070No related data.
AT2G0522040S ribosomal protein S17 (RPS17B)
AT2G0999040S ribosomal protein S16 (RPS16A)
AT2G14120No related data.
AT2G17700protein kinase family protein
AT2G20580No related data.
AT2G23780zinc finger (C3HC4-type RING finger) family protein
AT2G24360serine/threonine/tyrosine kinase, putative
AT2G26300No related data.
AT2G26460RED family protein
AT2G27530No related data.
AT2G29570No related data.
AT2G3161040S ribosomal protein S3 (RPS3A)
AT2G32400No related data.
AT2G32600hydroxyproline-rich glycoprotein family protein
AT2G33340nucleotide binding / ubiquitin-protein ligase
AT2G33840tRNA synthetase class I (W and Y) family protein
AT2G34260transducin family protein / WD-40 repeat family protein
AT2G39020GCN5-related N-acetyltransferase (GNAT) family protein
AT2G40660tRNA-binding region domain-containing protein
AT2G41500No related data.
AT2G42520DEAD box RNA helicase, putative
AT3G0208040S ribosomal protein S19 (RPS19A)
AT3G03920Gar1 RNA-binding region family protein
AT3G0492040S ribosomal protein S24 (RPS24A)
AT3G05060SAR DNA-binding protein, putative
AT3G05870No related data.
AT3G07790DGCR14-related
AT3G10400RNA recognition motif (RRM)-containing protein
AT3G11220No related data.
AT3G12110No related data.
AT3G12280No related data.
AT3G13445No related data.
AT3G14080small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
AT3G18165No related data.
AT3G18610No related data.
AT3G22480No related data.
AT3G22630No related data.
AT3G22660rRNA processing protein-related
AT3G27460hypothetical protein
AT3G4398040S ribosomal protein S29 (RPS29A)
AT3G4401040S ribosomal protein S29 (RPS29B)
AT3G4459060S acidic ribosomal protein P2 (RPP2D)
AT3G4503040S ribosomal protein S20 (RPS20A)
AT3G45640No related data.
AT3G46040No related data.
AT3G4991060S ribosomal protein L26 (RPL26A)
AT3G5258040S ribosomal protein S14 (RPS14C)
AT3G5389040S ribosomal protein S21 (RPS21B)
AT3G55280No related data.
AT3G55620No related data.
AT3G56150No related data.
AT3G5634040S ribosomal protein S26 (RPS26C)
AT3G56990No related data.
AT3G60240No related data.
AT3G62310RNA helicase, putative
AT4G00100No related data.
AT4G01370No related data.
AT4G01710No related data.
AT4G03450ankyrin repeat family protein
AT4G05420No related data.
AT4G09800No related data.
AT4G16360AMP-activated protein kinase
AT4G17520nuclear RNA-binding protein, putative
AT4G1810060S ribosomal protein L32 (RPL32A)
AT4G1900626S proteasome regulatory subunit, putative (RPN9)
AT4G24190No related data.
AT4G25630No related data.
AT4G2574040S ribosomal protein S10 (RPS10A)
AT4G27640importin beta-2 subunit family protein
AT4G29830No related data.
AT4G30890No related data.
AT4G31700No related data.
AT4G3386540S ribosomal protein S29 (RPS29C)
AT4G34460No related data.
AT4G3455540S ribosomal protein S25, putative
AT4G3467040S ribosomal protein S3A (RPS3aB)
AT4G35800No related data.
AT5G0296040S ribosomal protein S23 (RPS23B)
AT5G04280glycine-rich RNA-binding protein
AT5G04600RNA recognition motif (RRM)-containing protein
AT5G06160No related data.
AT5G11200DEAD/DEAH box helicase, putative
AT5G11900eukaryotic translation initiation factor SUI1 family protein
AT5G12250No related data.
AT5G14520pescadillo-related
AT5G1520040S ribosomal protein S9 (RPS9B)
AT5G16780No related data.
AT5G2029040S ribosomal protein S8 (RPS8A)
AT5G2354026S proteasome regulatory subunit, putative
AT5G42190No related data.
AT5G42950GYF domain-containing protein
AT5G43080No related data.
AT5G46840RNA recognition motif (RRM)-containing protein
AT5G47010No related data.
AT5G4793040S ribosomal protein S27 (RPS27D)
AT5G49510No related data.
AT5G50320No related data.
AT5G55160No related data.
AT5G56010No related data.
AT5G56030No related data.
AT5G57860ubiquitin family protein
AT5G5842040S ribosomal protein S4 (RPS4D)
AT5G59140SKP1 family protein
AT5G5985040S ribosomal protein S15A (RPS15aF)
AT5G60410No related data.
AT5G61150No related data.
AT5G6230040S ribosomal protein S20 (RPS20C)
AT5G64140No related data.
AT5G64730transducin family protein / WD-40 repeat family protein
ATCG00900No related data.
ATCG01240No related data.
AT1G18080No related data.
AT2G26060No related data.
AT3G49660transducin family protein / WD-40 repeat family protein
AT4G02730transducin family protein / WD-40 repeat family protein

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
AGL2MADSLAT5G15800
AGL3MADSLAT2G03710
ARR1GARP/ARR-BHAT3G16857
ARR10GARPLAT4G31920
ARR2GARP/ARR-BLAT4G16110
RAV1(2)AP2/EREBPHAT1G13260
WRKY18WRKY(Zn)HAT4G31800

Related PPIs for TFs
TF1TF2PPI
AT3G58780AT5G15800GO