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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ATHCHIB  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G12500ATHCHIBGSP:5 PPI:9ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE); chitinase.
Subcellar localization
extracellular: Pubmed15694452; vacuole: Pubmed16381842; plastid: Pubmed16381842;
Related organ
carpel      soluble fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
root      soluble fraction,1-DE      Related article
root      SDS fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
Representative Gene Model Description
AT3G12500.1:ARABIDOPSIS THALIANA BASIC CHITINASE (ATHCHIB); FUNCTIONS IN: chitinase activity; INVOLVED IN: response to cadmium ion, defense response to fungus, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726), Chitin-binding, type 1 (InterPro:IPR001002); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT4G01700.1); Has 2031 Blast hits to 1792 proteins in 398 species: Archae - 0; Bacteria - 378; Metazoa - 37; Fungi - 152; Plants - 1350; Viruses - 10; Other Eukaryotes - 104 (source: NCBI BLink).

Related KEGG pathway    
Metabolic Pathways
   |----------Carbohydrate Metabolism
   |--------------------Nucleotide sugars metabolismLink to keggView overall Pathway
Predicted Mutant Phenotypes
sepal    PO:0009031;    chlorenchyma  PO:0005426;    stamen    PO:0009029;    
Database cross-references
TAIR Gene: AT3G12500;
IPI: IPI00537422;
UniParc: UPI00000486F1;
REFSEQ_PROVISIONAL: NP_566426.1;
KEGG: AT3G12500;

GSPannotationmethodsrelated
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G26090(RGS1)RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); G-protein coupled receptortext mining 21952135(yeast-2-hybrid)
AT5G24090acidic endochitinase (CHIB1)EC
AT3G54420(ATEP3)ATEP3; chitinaseEC
AT4G01700chitinase, putativeEC

 

Predicted
Functional Partners
annotationTotal
AT2G43580chitinase, putative
AT2G43570chitinase, putative
AT3G47540chitinase, putative
AT3G54420No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
ERF1[AT3G23240]AT3G12500TFBS:GCCGCC 9851977
GCN5[AT3G54610]AT3G12500No detail info. 18644002
HY5[AT5G11260]AT3G12500No detail info. 18644002

 

TFFamilyConfidenceDetails
AGL2MADSLAT5G15800
AGL3MADSHAT2G03710
ID1C2H2(Zn)LAT1G25250
RAV1(2)AP2/EREBPHAT1G13260
TGA1bZIPHAT5G65210