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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:ATFER2  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G11050ATFER2GSP:2 PPI:4ATFER2 (ferritin 2); binding / ferric iron binding / oxidoreductase/ transition metal ion binding.
Subcellar localization
plastid: Pubmed16381842;
Related organ
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
Representative Gene Model Description
AT3G11050.1:ferritin 2 (ATFER2); FUNCTIONS IN: oxidoreductase activity, ferric iron binding, binding, transition metal ion binding; INVOLVED IN: response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Ferritin-like (InterPro:IPR009040), Ferritin, conserved site (InterPro:IPR014034), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin and Dps (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: ATFER4 (ferritin 4); binding / ferric iron binding / oxidoreductase/ transition metal ion binding (TAIR:AT2G40300.1); Has 2388 Blast hits to 2383 proteins in 603 species: Archae - 119; Bacteria - 761; Metazoa - 1101; Fungi - 6; Plants - 217; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).

Database cross-references
TAIR Gene: AT3G11050;
IPI: IPI00517588;
UniParc: UPI0000093DE2;
REFSEQ_PROVISIONAL: NP_187716.1;
KEGG: AT3G11050;

GSPannotationmethodsrelated
AT3G59220(PRN)PRN (PIRIN); calmodulin bindingtext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT3G59220(PRN)PRN (PIRIN); calmodulin bindingtext mining 21952135(yeast-2-hybrid)

 

Predicted
Functional Partners
annotationTotal
AT3G56090No related data.
AT5G01600No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

Transcription factorTarget geneDetail infoRelated Artical
GCN5[AT3G54610]AT3G11050No detail info. 18644002
HY5[AT5G11260]AT3G11050No detail info. 18644002

 

TFFamilyConfidenceDetails
AGMADSLAT4G18960
AGL1MADSLAT3G58780
AGL15MADSLAT5G13790
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210

Related PPIs for TFs
TF1TF2PPI
AT4G18960AT3G58780GO
AT4G18960AT5G13790GO
AT3G58780AT5G13790GO