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AtPID

Arabidopsis thaliana Protein Interactome Database

Search Results

Query protein:AT3G04840  Network Display  
LocusSymbolNumber of interactionsAnnotation
AT3G04840AT3G04840GSP:8 PPI:10740S ribosomal protein S3A (RPS3aA).
Subcellar localization
cytosol: Pubmed15821981; plastid: Pubmed15028209; plasma membrane: Pubmed17317660;
Related organ
carpel      detergent fraction,1-DE      Related article
carpel      urea fraction,1-DE      Related article
carpel      soluble fraction,1-DE      Related article
cell suspension culture      full cell extract,1-DE      Related article
cell suspension culture      SDS fraction,1-DE      Related article
cell suspension culture      detergent fraction,1-DE      Related article
cell suspension culture      soluble fraction,1-DE      Related article
cell suspension culture      urea fraction,1-DE      Related article
cell suspension culture      soluble fraction,Schagger 1-DE      Related article
cell suspension culture      SDS fraction,Schagger 1-DE      Related article
cotyledon      SDS fraction,1-DE      Related article
flower      SDS fraction,1-DE      Related article
flower bud      SDS fraction,1-DE      Related article
juvenile leaf      SDS fraction,1-DE      Related article
pollen      combined fractions, 1-DE      Related article
pollen      soluble fraction, 1-DE      Related article
pollen      urea fraction, 1-DE      Related article
pollen      cyclohexane fraction, 1-DE      Related article
pollen      detergent fraction, 1-DE      Related article
pollen      urea total extract, 1-DE      Related article
pollen      total extract, ICAT labelling, avidin affinity enriched      Related article
pollen      total extract, ICAT labelling, avidin affinity flow through      Related article
root      SDS fraction,1-DE      Related article
seed      detergent fraction,1-DE      Related article
seed      urea fraction,1-DE      Related article
seed      soluble fraction,1-DE      Related article
silique      urea fraction,1-DE      Related article
silique      soluble fraction,1-DE      Related article
silique      detergent fraction,1-DE      Related article
shoot      Phosphopeptide enriched fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Phosphopeptide enriched fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: SDS fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
shoot      Flow through fraction: soluble fraction of A. thaliana shoots; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchae; IMAC affinity chromatography ng      Related article
rosette      Flow through fraction: SDS fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Phosphopeptide enriched fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC/TIO2 affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves ED; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
rosette      Flow through fraction: Soluble fraction of A. thaliana rosette leaves EN; precipitation; strong cation exchange; IMAC affinity chromatography      Related article
Related complex
Ribosome, archaea
Ribosome, eukaryotes
Representative Gene Model Description
AT3G04840.1:40S ribosomal protein S3A (RPS3aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S3Ae, conserved site (InterPro:IPR018281), Ribosomal protein S3Ae (InterPro:IPR001593); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S3A (RPS3aB) (TAIR:AT4G34670.1); Has 943 Blast hits to 938 proteins in 297 species: Archae - 150; Bacteria - 1; Metazoa - 369; Fungi - 110; Plants - 126; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).

Phosphorylation info: Phosphoprotein with evidence,detail info please click the following link
Related KEGG pathway    
Genetic Information Processing
   |----------Translation
   |--------------------RibosomeLink to keggView overall Pathway
Database cross-references
TAIR Gene: AT3G04840;
IPI: IPI00520872;
UniParc: UPI000009EB6C;
REFSEQ_PROVISIONAL: NP_187135.1;
KEGG: AT3G04840;

GSPannotationmethodsrelated
AT5G56750Ndr family proteintext mining 21036873(yeast-2-hybrid assay:FDS1176001)
AT5G08080(SYP132)SYP132 (SYNTAXIN OF PLANTS 132); SNAP receptortext mining 24556609(Affinity Capture-MS)
AT3G11820(SYP121)SYP121 (SYNTAXIN OF PLANTS 121); SNAP receptor/ protein anchortext mining 24556609(Affinity Capture-MS)
AT5G56750(NDL1)No related data.text mining 21952135(yeast-2-hybrid)
AT5G03240(UBQ3)UBQ3 (POLYUBIQUITIN 3); protein bindingtext mining 23667124(Affinity Capture-MS)
AT3G05710(SYP43)SYP43 (SYNTAXIN OF PLANTS 43); SNAP receptortext mining 24556609(Affinity Capture-MS)
AT5G46630clathrin adaptor complexes medium subunit family proteintext mining 23975897(Affinity Capture-MS)
AT4G29040(RPT2a)RPT2a (regulatory particle AAA-ATPase 2a); ATPasetext mining 24846764(Affinity Capture-MS)

 

Predicted
Functional Partners
annotationTotal
AT2G31320No related data.
AT3G17590No related data.
AT4G19610RNA binding / nucleic acid binding / nucleotide binding
AT2G36010No related data.
AT3G13640No related data.
AT4G3467040S ribosomal protein S3A (RPS3aB)
AT5G0385040S ribosomal protein S28 (RPS28B)
AT5G0296040S ribosomal protein S23 (RPS23B)
AT4G36020No related data.
AT4G35490No related data.
AT4G3455540S ribosomal protein S25, putative
AT4G3386540S ribosomal protein S29 (RPS29C)
AT4G32720No related data.
AT4G31700No related data.
AT4G27650No related data.
AT4G2623060S ribosomal protein L31 (RPL31B)
AT4G25630No related data.
AT4G22380ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
AT4G09800No related data.
AT4G0223060S ribosomal protein L19 (RPL19C)
AT4G00660DEAD/DEAH box helicase, putative
AT3G6077040S ribosomal protein S13 (RPS13A)
AT3G5749040S ribosomal protein S2 (RPS2D)
AT3G5634040S ribosomal protein S26 (RPS26C)
AT3G5389040S ribosomal protein S21 (RPS21B)
AT3G52090No related data.
ATMG01190No related data.
ATMG00980No related data.
ATCG01240No related data.
ATCG00900No related data.
AT5G65900DEAD/DEAH box helicase, putative
AT5G63120ethylene-responsive DEAD box RNA helicase, putative (RH30)
AT5G6230040S ribosomal protein S20 (RPS20C)
AT5G5985040S ribosomal protein S15A (RPS15aF)
AT5G58230No related data.
AT5G52640No related data.
AT5G4876060S ribosomal protein L13A (RPL13aD)
AT5G4770060S acidic ribosomal protein P1 (RPP1C)
AT5G4643060S ribosomal protein L32 (RPL32B)
AT5G4152040S ribosomal protein S10 (RPS10B)
AT5G3553040S ribosomal protein S3 (RPS3C)
AT5G26360chaperonin, putative
AT5G23535KOW domain-containing protein
AT5G2029040S ribosomal protein S8 (RPS8A)
AT5G1838040S ribosomal protein S16 (RPS16C)
AT5G15550transducin family protein / WD-40 repeat family protein
AT5G1520040S ribosomal protein S9 (RPS9B)
AT5G11200DEAD/DEAH box helicase, putative
AT5G08420RNA binding
AT5G08180ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
AT5G0709040S ribosomal protein S4 (RPS4B)
AT5G0480040S ribosomal protein S17 (RPS17D)
AT2G3448060S ribosomal protein L18A (RPL18aB)
AT2G33210No related data.
AT2G2771060S acidic ribosomal protein P2 (RPP2B)
AT2G27530No related data.
AT2G25070protein phosphatase 2C, putative / PP2C, putative
AT2G2045060S ribosomal protein L14 (RPL14A)
AT2G18020No related data.
AT1G72370No related data.
AT1G70600structural constituent of ribosome
AT1G6658060S ribosomal protein L10 (RPL10C)
AT1G61580No related data.
AT1G54290eukaryotic translation initiation factor SUI1, putative
AT1G3403040S ribosomal protein S18 (RPS18B)
AT1G33140No related data.
AT1G3312060S ribosomal protein L9 (RPL90B)
AT1G33040No related data.
AT1G2740060S ribosomal protein L17 (RPL17A)
AT1G22780No related data.
AT1G18080No related data.
AT1G13950No related data.
AT1G10490hypothetical protein
AT1G07770No related data.
AT1G01040No related data.
AT3G49010No related data.
AT3G4503040S ribosomal protein S20 (RPS20A)
AT3G4401040S ribosomal protein S29 (RPS29B)
AT3G4398040S ribosomal protein S29 (RPS29A)
AT3G23990No related data.
AT3G23620brix domain-containing protein
AT3G20740No related data.
AT3G13920No related data.
AT3G13230RNA binding
AT3G11940No related data.
AT3G1151040S ribosomal protein S14 (RPS14B)
AT3G1125060S acidic ribosomal protein P0 (RPP0C)
AT3G1009040S ribosomal protein S28 (RPS28A)
AT3G0963060S ribosomal protein L4/L1 (RPL4A)
AT3G05590No related data.
AT3G0208040S ribosomal protein S19 (RPS19A)
AT3G01790ribosomal protein L13 family protein
AT2G45640No related data.
AT2G4486060S ribosomal protein L24, putative
AT2G4412060S ribosomal protein L7 (RPL7C)
AT2G42740No related data.
AT2G42520DEAD box RNA helicase, putative
AT2G3760060S ribosomal protein L36 (RPL36A)
AT2G36620No related data.

O: Ortholog interaction datasets
G: Shared biological function:Go Ontology
E: Co-expression
F: Gene fusion method
N: Gene neighbors method
P: Phylogenetic profile method
D: Enriched domain pair
What does the displayed number mean when your mouse moved over a certain icon?(LR)


Transcriptional Regulation

TFFamilyConfidenceDetails
AGL1MADSLAT3G58780
ARR1GARP/ARR-BLAT3G16857
CDC5MYBLAT1G09770
RAP2.2AP2/EREBPLAT3G14230
RAV1(2)AP2/EREBPLAT1G13260
TGA1bZIPLAT5G65210